Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01320 Erythranthe guttata HOM05D011575 ORTHO05D004912 8.1e-52 206.8 107 100.0
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 4.9e-33 144.4 105 70.5
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 6.4e-33 144.1 110 70.9
SGA_v2.0_scaffold7G03838 Striga asiatica HOM05D011575 ORTHO05D004912 6.4e-33 144.1 108 74.1
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 5.4e-32 141.0 108 72.2
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 7.3e-29 130.6 108 67.6
Oeu002741.1 Olea europaea HOM05D011575 ORTHO05D004912 5.6e-21 104.4 109 56.9
PGSC0003DMG400016452 Solanum tuberosum HOM05D011575 ORTHO05D004912 1.2e-18 96.7 106 54.7
unitig_744.g24521 Utricularia gibba HOM05D011575 ORTHO05D004912 2.4e-16 89.0 107 49.5
unitig_0.g942 Utricularia gibba HOM05D011575 ORTHO05D004912 5.5e-16 87.8 108 52.8
Sopen02g025250 Solanum pennellii HOM05D011575 ORTHO05D004912 3.5e-15 85.1 106 49.1
PGSC0003DMG400016451 Solanum tuberosum HOM05D011575 ORTHO05D004912 6.7e-14 80.9 108 47.2
Solyc02g080550.1 Solanum lycopersicum HOM05D011575 ORTHO05D004912 1.9e-13 79.3 90 51.1
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 5.6e-13 77.8 93 50.5
Solyc02g080560.1 Solanum lycopersicum HOM05D011575 ORTHO05D004912 1.3e-12 76.6 108 46.3
Sopen02g025260 Solanum pennellii HOM05D011575 ORTHO05D004912 1.6e-12 76.3 108 45.4
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 2.1e-12 75.9 93 49.5
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 5.8e-10 67.8 104 40.4
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 3.8e-09 65.1 109 44.0
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.1e-08 63.5 87 44.8
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 1.4e-08 63.2 98 44.9
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 1.9e-08 62.8 103 45.6
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.9e-08 62.8 109 42.2
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 3.2e-08 62.0 109 42.2
RcHm_v2.0_Chr5g0002951 Rosa chinensis HOM05D011727 ORTHO05D004912 3.2e-08 62.0 88 47.7
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 4.2e-08 61.6 92 44.6
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 4.2e-08 61.6 100 41.0
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 5.5e-08 61.2 108 39.8
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 5.5e-08 61.2 88 40.9
Lj1g0009560 Lotus japonicus HOM05D011727 ORTHO05D004912 5.5e-08 61.2 98 42.9
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 5.5e-08 61.2 106 39.6
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 9.3e-08 60.5 83 45.8
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 9.3e-08 60.5 83 45.8
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 9.3e-08 60.5 83 45.8
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 9.3e-08 60.5 81 48.1
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 9.3e-08 60.5 106 42.5
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 1.6e-07 59.7 109 41.3
FAN25G2989 Fragaria x ananassa HOM05D011727 ORTHO05D004912 1.6e-07 59.7 94 45.7
FAN21G2105 Fragaria x ananassa HOM05D011727 ORTHO05D004912 2.1e-07 59.3 94 45.7
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 2.1e-07 59.3 92 40.2
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 2.7e-07 58.9 100 43.0
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 3.5e-07 58.5 110 40.9
FvH4_3g02050 Fragaria vesca HOM05D011727 ORTHO05D004912 3.5e-07 58.5 94 45.7
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.6e-07 58.2 97 41.2
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 6.0e-07 57.8 110 40.0
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 6.0e-07 57.8 101 41.6
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 6.0e-07 57.8 83 47.0
Medtr8g468960 Medicago truncatula HOM05D011727 ORTHO05D004912 6.0e-07 57.8 96 42.7
Ca_22861_v3 Cicer arietinum L. HOM05D011727 ORTHO05D004912 7.9e-07 57.4 94 45.7
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 7.9e-07 57.4 110 38.2
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 1.0e-06 57.0 101 40.6
Glyma.13G082350 Glycine max HOM05D011727 ORTHO05D004912 1.0e-06 57.0 105 38.1
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.3e-06 56.6 79 48.1
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.3e-06 56.6 79 48.1
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 1.3e-06 56.6 94 39.4
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 1.8e-06 56.2 110 40.0
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.8e-06 56.2 79 48.1
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 3.9e-06 55.1 91 40.7
DCAR_024934 Daucus carota HOM05D011575 ORTHO05D004912 3.9e-06 55.1 110 41.8
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 3.9e-06 55.1 109 42.2
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 3.9e-06 55.1 88 40.9
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 3.9e-06 55.1 106 38.7
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 5.1e-06 54.7 92 39.1
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 5.1e-06 54.7 96 36.5


User provided reference genes

Program Settings