Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 2.1e-58 228.8 114 100.0
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.2e-29 133.3 103 68.0
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 8.9e-25 117.1 115 53.9
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.5e-24 116.3 101 62.4
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 4.6e-21 104.8 114 46.5
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 4.6e-21 104.8 90 56.7
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 6.6e-20 100.9 111 50.5
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.1e-19 100.1 100 52.0
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.5e-19 99.8 113 45.1
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.5e-19 99.0 102 51.0
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.6e-18 96.3 114 45.6
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.1e-18 95.9 111 45.0
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.1e-18 95.9 111 45.0
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.8e-18 95.5 94 48.9
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 3.6e-18 95.1 91 57.1
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 6.2e-18 94.4 113 43.4
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 8.1e-18 94.0 109 51.4
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.4e-17 93.2 113 46.0
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.4e-17 93.2 96 52.1
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.8e-17 92.8 111 48.6
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 2.4e-17 92.4 110 43.6
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.4e-17 92.4 98 52.0
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 3.1e-17 92.0 97 46.4
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.3e-17 91.3 110 44.5
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 5.3e-17 91.3 112 47.3
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 6.9e-17 90.9 111 41.4
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 9.0e-17 90.5 99 50.5
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 9.0e-17 90.5 110 50.0
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 9.0e-17 90.5 113 42.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 9.0e-17 90.5 113 42.5
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 9.0e-17 90.5 97 44.3
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.5e-16 89.7 114 43.0
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.6e-16 89.0 102 47.1
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 2.6e-16 89.0 114 43.0
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 3.4e-16 88.6 110 40.9
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 3.4e-16 88.6 110 48.2
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.4e-16 88.6 89 49.4
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 4.5e-16 88.2 116 47.4
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 4.5e-16 88.2 108 45.4
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.5e-16 88.2 110 47.3
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.8e-16 87.8 113 43.4
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 5.8e-16 87.8 106 42.5
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.6e-16 87.4 107 48.6
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 7.6e-16 87.4 108 41.7
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.3e-15 86.7 103 50.5
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.2e-15 85.9 109 43.1
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.8e-15 85.1 95 42.1
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.8e-15 85.1 112 40.2
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 3.8e-15 85.1 96 44.8
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 4.9e-15 84.7 108 43.5
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.9e-15 84.7 112 40.2
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 6.4e-15 84.3 95 46.3
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 6.4e-15 84.3 110 41.8
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.4e-15 84.3 110 48.2
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.4e-15 84.3 92 51.1
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 6.4e-15 84.3 97 49.5
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.4e-14 83.2 95 46.3
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.9e-14 82.8 102 44.1
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.9e-14 82.8 95 42.1
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.9e-14 82.8 99 46.5
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.9e-14 82.8 109 41.3
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 2.4e-14 82.4 87 57.5
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 3.2e-14 82.0 111 43.2
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.2e-14 82.0 112 39.3
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 4.2e-14 81.6 119 42.0
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.2e-14 81.6 109 43.1
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 5.4e-14 81.3 104 45.2
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 5.4e-14 81.3 103 42.7
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 7.1e-14 80.9 76 60.5
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 7.1e-14 80.9 102 42.2
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 7.1e-14 80.9 103 43.7
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 7.1e-14 80.9 114 41.2
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 9.3e-14 80.5 85 55.3
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.3e-14 80.5 109 40.4
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.3e-14 80.5 109 40.4
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-13 80.1 108 41.7
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.2e-13 80.1 105 43.8
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.6e-13 79.7 108 41.7
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 1.6e-13 79.7 63 60.3
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.6e-13 79.7 108 44.4
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 2.1e-13 79.3 125 40.8
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 2.7e-13 79.0 111 39.6
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.5e-13 78.6 112 41.1
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 3.5e-13 78.6 63 61.9
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 3.5e-13 78.6 84 52.4
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 4.6e-13 78.2 104 44.2
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.6e-13 78.2 108 40.7
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 4.6e-13 78.2 93 43.0
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 6.0e-13 77.8 63 60.3
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 7.9e-13 77.4 70 57.1
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 7.9e-13 77.4 108 42.6
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.0e-12 77.0 101 42.6
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.3e-12 76.6 105 41.9
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 1.3e-12 76.6 93 47.3
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.3e-12 75.9 104 44.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.3e-12 75.9 106 43.4
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 3.9e-12 75.1 105 42.9
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 3.9e-12 75.1 105 42.9
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.9e-12 75.1 73 50.7
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 5.1e-12 74.7 109 43.1
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 8.7e-12 73.9 105 42.9
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.7e-12 73.9 87 46.0
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.9e-11 72.8 105 43.8
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.9e-11 72.8 110 38.2
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.9e-11 72.8 123 38.2
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 2.5e-11 72.4 117 38.5
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.5e-11 72.4 93 46.2
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 3.3e-11 72.0 105 41.9
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 3.3e-11 72.0 105 42.9
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.3e-11 71.6 107 41.1
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.3e-11 71.6 87 43.7
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 4.3e-11 71.6 68 52.9
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 5.6e-11 71.2 116 37.1
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 5.6e-11 71.2 117 39.3
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 5.6e-11 71.2 94 46.8
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 7.4e-11 70.9 110 39.1
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 7.4e-11 70.9 105 42.9
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 7.4e-11 70.9 105 41.9
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.3e-10 70.1 104 41.3
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 1.6e-10 69.7 116 37.1
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.8e-10 68.9 96 43.8
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.8e-10 68.9 90 42.2
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 3.6e-10 68.6 95 45.3
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.2e-10 67.8 87 42.5
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 8.1e-10 67.4 105 40.0
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 8.1e-10 67.4 105 40.0
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.8e-09 66.2 120 34.2
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.4e-09 65.9 67 52.2
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.4e-09 65.9 91 41.8
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.1e-09 65.5 96 42.7
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 5.3e-09 64.7 122 34.4
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 9.0e-09 63.9 103 41.7
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.5e-08 63.2 105 38.1
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.0e-08 62.8 120 35.0
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 2.6e-08 62.4 71 42.3
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.6e-08 62.4 122 36.1
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 3.4e-08 62.0 120 32.5
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 3.4e-08 62.0 65 50.8
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 3.4e-08 62.0 65 50.8
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 5.8e-08 61.2 105 38.1
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-07 60.1 105 37.1
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 1.3e-07 60.1 119 34.5
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 1.3e-07 60.1 119 34.5
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 1.3e-07 60.1 119 34.5
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.7e-07 59.7 66 45.5
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.2e-07 59.3 130 32.3
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 2.9e-07 58.9 119 34.5
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.9e-07 58.2 111 34.2
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.9e-07 58.2 111 34.2
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 6.4e-07 57.8 113 35.4
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 8.4e-07 57.4 111 33.3
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 8.4e-07 57.4 111 33.3
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.1e-06 57.0 95 34.7
Nitab4.5_0000389g0090 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.1e-06 57.0 62 46.8
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 4.2e-06 55.1 119 31.9


User provided reference genes

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