Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.6e-106 389.4 196 100.0
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 5.1e-52 208.4 213 58.7
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 3.1e-49 199.1 196 56.1
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.2e-48 197.2 195 57.9
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 9.9e-48 194.1 185 60.5
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.2e-46 189.1 190 56.8
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.0e-44 184.1 183 57.9
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.8e-42 176.0 200 51.0
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 9.0e-41 171.0 196 52.6
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 4.5e-40 168.7 220 48.6
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 5.8e-40 168.3 169 59.2
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 9.9e-40 167.5 209 48.3
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.3e-39 167.2 224 49.6
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.2e-39 166.4 202 48.5
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.2e-39 166.4 226 48.2
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 4.9e-39 165.2 208 50.0
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 6.4e-39 164.9 201 51.7
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 8.4e-39 164.5 208 50.0
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 4.2e-38 162.2 186 52.2
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 7.1e-38 161.4 175 53.7
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 9.3e-38 161.0 217 47.0
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.2e-37 160.6 161 60.9
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 4.6e-37 158.7 204 46.1
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.0e-36 157.5 217 47.0
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 5.1e-36 155.2 191 51.3
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.7e-36 154.5 211 48.8
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.1e-35 154.1 214 44.9
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.1e-35 154.1 201 50.7
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.5e-35 153.7 195 51.8
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.5e-35 153.7 199 50.8
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.3e-35 152.5 168 53.0
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.3e-35 152.5 216 46.8
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 5.6e-35 151.8 216 45.4
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.3e-34 150.6 212 43.9
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 2.8e-34 149.4 191 48.2
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 3.7e-34 149.1 218 47.2
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 6.2e-34 148.3 186 45.2
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 8.1e-34 147.9 194 48.5
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.4e-33 147.1 188 46.8
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 1.4e-33 147.1 215 43.3
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.8e-33 146.7 186 47.8
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.4e-33 146.4 184 48.9
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 4.0e-33 145.6 186 49.5
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.9e-33 144.8 211 47.4
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 9.0e-33 144.4 191 50.3
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 9.0e-33 144.4 196 45.9
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.5e-32 143.7 188 50.5
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.4e-32 142.5 218 45.9
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.5e-32 142.1 211 46.4
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.8e-32 141.7 211 46.0
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.6e-32 141.4 217 45.2
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.7e-31 140.2 216 42.1
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.7e-31 140.2 219 45.2
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 2.2e-31 139.8 183 49.2
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 2.2e-31 139.8 207 42.5
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.9e-31 139.4 215 42.3
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 3.8e-31 139.0 216 43.5
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.9e-31 138.7 215 41.9
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.4e-31 138.3 182 48.4
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 2.5e-30 136.3 179 46.4
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 3.2e-30 136.0 190 47.9
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 7.1e-30 134.8 210 43.3
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 7.1e-30 134.8 220 45.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 2.1e-29 133.3 212 40.6
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 3.5e-29 132.5 202 44.1
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 4.6e-29 132.1 172 49.4
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.0e-28 131.0 178 50.0
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.3e-28 130.6 189 48.1
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.8e-28 130.2 187 46.0
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 3.9e-28 129.0 185 48.1
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.1e-27 127.5 172 48.8
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 2.5e-27 126.3 184 46.2
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.5e-27 126.3 207 46.4
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.5e-27 126.3 207 46.4
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 4.3e-27 125.6 195 44.6
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 4.3e-27 125.6 172 48.8
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.3e-26 124.0 201 45.3
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.6e-26 123.6 213 43.7
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.6e-26 123.6 184 47.8
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 2.8e-26 122.9 198 43.4
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.7e-26 122.5 198 44.4
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.4e-25 119.8 196 43.9
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.1e-25 119.4 195 42.6
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 6.9e-25 118.2 200 44.5
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 9.0e-25 117.9 180 48.3
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 9.0e-25 117.9 146 50.7
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 7.6e-24 114.8 203 41.9
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.0e-23 114.4 176 46.0
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.0e-23 114.4 183 45.9
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.2e-23 113.2 192 43.8
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 4.9e-23 112.1 183 44.8
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 6.5e-23 111.7 203 44.3
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.5e-23 111.7 207 44.4
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 6.5e-23 111.7 200 43.5
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 8.4e-23 111.3 185 42.7
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.4e-22 110.5 162 46.3
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 2.5e-22 109.8 147 49.0
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 5.5e-22 108.6 146 51.4
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 5.5e-22 108.6 152 48.7
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 7.1e-22 108.2 180 44.4
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 2.7e-21 106.3 176 43.2
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 6.0e-21 105.1 148 52.0
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 7.9e-21 104.8 180 42.2
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.0e-20 102.8 188 44.7
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 3.9e-20 102.4 178 41.6
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.1e-19 100.9 186 43.0
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.1e-19 100.9 186 40.9
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.9e-19 100.1 181 38.7
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 2.2e-18 96.7 179 39.7
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 3.7e-18 95.9 205 38.0
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 6.3e-18 95.1 180 39.4
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 3.1e-17 92.8 171 39.8
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 3.1e-17 92.8 178 39.9
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 5.3e-17 92.0 185 37.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 6.9e-17 91.7 208 37.0
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 9.0e-17 91.3 192 38.5
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.5e-16 90.5 193 36.3
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 2.0e-16 90.1 192 39.1
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 3.4e-16 89.4 166 41.0
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 3.4e-16 89.4 166 39.8
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.0e-15 87.8 189 37.6
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 2.2e-15 86.7 171 36.3
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.1e-14 84.3 182 36.8
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.1e-14 84.3 189 37.0
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.4e-14 84.0 187 36.4
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.5e-14 83.2 202 37.1
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 2.5e-14 83.2 254 32.3
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 3.2e-14 82.8 180 36.7
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 5.5e-14 82.0 180 36.7
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 5.5e-14 82.0 180 36.7
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 7.2e-14 81.6 223 31.8
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 9.4e-14 81.3 62 66.1
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.6e-13 80.5 180 36.7
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 2.7e-13 79.7 177 36.7
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 3.6e-13 79.3 174 39.1
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 4.6e-13 79.0 173 38.2
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 4.6e-13 79.0 173 38.2
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 6.1e-13 78.6 178 37.1
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 1.8e-12 77.0 188 38.3
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 3.0e-12 76.3 177 35.0
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 5.1e-12 75.5 188 34.0
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.5e-11 73.2 190 34.2
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 2.5e-11 73.2 143 43.4
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 5.7e-11 72.0 171 37.4
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 2.8e-10 69.7 172 36.6
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 4.8e-10 68.9 168 34.5
ClCG01G022190 Citrullus lanatus HOM05D004361 ORTHO05D004706 8.2e-10 68.2 207 34.8
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.1e-09 67.8 89 46.1
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.8e-09 67.0 196 33.7
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.8e-09 67.0 166 36.7
Sed0009826 Sechium edule HOM05D004361 ORTHO05D004706 1.2e-08 64.3 170 34.1
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 2.0e-08 63.5 158 36.1
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.0e-07 61.2 78 46.2
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.3e-07 60.8 163 35.6
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 1.7e-07 60.5 122 37.7
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 1.9e-06 57.0 197 28.9
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 2.5e-06 56.6 201 27.9
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 4.2e-06 55.8 160 36.2
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 5.5e-06 55.5 52 61.5
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 9.4e-06 54.7 57 50.9


User provided reference genes

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