Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 4.0e-173 611.3 305 100.0
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 86.2
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 84.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 85.2
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 85.2
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 82.6
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 84.9
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 82.3
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 84.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 82.3
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 86.2
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 84.6
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 83.9
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 83.9
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 83.9
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 81.0
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 83.0
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 84.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 84.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 3.6e-145 518.5 326 79.4
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 80.3
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 81.3
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 80.3
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 82.6
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 80.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 83.0
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 80.0
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 81.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 82.3
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 81.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 82.0
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 82.3
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.3e-144 515.8 308 81.5
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 82.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 81.0
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 82.0
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 84.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 83.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 82.3
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 82.3
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 80.7
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.0
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 82.3
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 81.3
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 80.7
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 81.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 1.7e-142 509.6 304 81.9
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 82.6
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 78.7
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 6.3e-142 507.7 305 80.0
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 78.4
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.4e-141 506.5 305 79.3
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 81.6
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 2.4e-141 505.8 307 79.2
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 79.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 7.0e-141 504.2 305 78.4
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 7.0e-141 504.2 305 79.0
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 7.0e-141 504.2 305 81.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.2e-140 503.4 301 83.1
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 2.0e-140 502.7 305 79.3
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.0e-139 500.4 305 78.7
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.3e-139 500.0 305 78.7
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.7e-139 499.6 305 77.7
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 2.2e-139 499.2 305 77.7
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.2e-139 499.2 305 77.7
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 2.2e-139 499.2 305 79.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 2.9e-139 498.8 305 81.6
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.8e-139 498.4 305 77.7
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.8e-139 498.4 305 80.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 6.5e-139 497.7 300 82.0
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 78.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.9e-138 496.1 305 78.0
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.2e-138 495.4 305 77.4
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 4.2e-138 495.0 303 80.2
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 9.4e-138 493.8 301 81.4
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.6e-137 493.0 305 77.7
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 2.1e-137 492.7 305 77.0
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.1e-137 492.7 302 77.5
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 2.7e-137 492.3 305 77.0
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.7e-137 492.3 302 79.5
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 4.7e-137 491.5 305 78.7
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 8.0e-137 490.7 305 77.4
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.0e-136 490.3 305 76.4
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.4e-136 490.0 305 76.1
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.3e-135 485.3 330 71.8
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 8.2e-134 480.7 307 77.9
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.1e-133 480.3 372 65.6
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.4e-133 479.9 305 77.4
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.1e-133 478.4 307 74.6
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 5.3e-133 478.0 307 75.9
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.2e-132 476.9 307 75.9
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.5e-132 475.3 304 76.3
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 3.5e-132 475.3 307 73.9
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 5.9e-132 474.6 307 73.6
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 7.7e-132 474.2 305 76.4
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 1.0e-131 473.8 305 74.4
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.7e-131 473.0 305 75.4
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.5e-130 469.9 303 72.6
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-129 466.8 306 72.9
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-129 466.8 306 72.9
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.2e-129 466.8 306 72.9
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.7e-129 465.7 306 72.9
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 6.1e-129 464.5 305 72.8
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 9.8e-127 457.2 303 74.6
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 4.8e-126 454.9 388 62.4
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 4.1e-125 451.8 304 73.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 4.1e-125 451.8 304 73.0
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.6e-124 449.9 304 73.0
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 7.7e-124 447.6 305 73.4
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 2.2e-123 446.0 304 71.7
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 5.5e-122 441.4 300 70.3
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 7.5e-119 431.0 304 67.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 2.7e-116 422.5 306 66.0
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.9e-115 419.1 304 65.1
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 9.5e-114 414.1 305 69.8
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 4.1e-109 398.7 302 63.6
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.5e-108 395.6 261 78.5
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 3.1e-104 382.5 303 61.7
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 5.2e-104 381.7 235 81.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.1e-98 364.0 225 77.3
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.2e-97 360.5 309 57.9
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 7.5e-95 351.3 225 79.1
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.4e-93 346.3 228 77.6
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.4e-88 330.5 207 75.8
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 3.5e-68 262.7 160 78.1
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.0e-67 261.2 181 71.8
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.9e-61 240.4 143 80.4
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.2e-60 237.7 149 74.5
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 9.6e-58 228.0 154 70.8
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.3e-54 217.6 153 66.0
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 2.1e-49 200.3 300 44.0
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.6e-39 166.8 125 63.2
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 2.2e-38 163.7 80 93.8
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 2.9e-38 163.3 130 56.2
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 1.4e-37 161.0 300 34.7
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 9.4e-37 158.3 80 87.5
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 2.7e-36 156.8 83 83.1
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 7.9e-36 155.2 89 79.8
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.8e-35 154.1 204 46.6
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.3e-35 153.7 78 88.5
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 9.7e-34 148.3 305 34.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.2e-28 131.3 78 79.5
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 2.8e-25 120.2 76 73.7
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 5.3e-24 115.9 64 84.4
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.3e-22 111.3 60 83.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.2e-22 110.5 58 86.2
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 8.5e-22 108.6 293 32.4
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 5.3e-16 89.4 74 70.3
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 3.2e-13 80.1 237 27.4


User provided reference genes

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