Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 3.5e-36 154.5 80 100.0
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 3.6e-20 101.3 84 69.0
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 3.0e-19 98.2 83 67.5
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 3.9e-19 97.8 82 63.4
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 2.6e-18 95.1 82 64.6
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 4.4e-18 94.4 84 63.1
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 3.7e-17 91.3 82 62.2
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 3.7e-17 91.3 82 62.2
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 3.7e-17 91.3 83 62.7
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 1.1e-16 89.7 91 58.2
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 2.4e-16 88.6 78 62.8
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 3.1e-16 88.2 85 60.0
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 5.3e-16 87.4 81 60.5
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 7.0e-16 87.0 85 62.4
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 7.0e-16 87.0 85 57.6
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 1.2e-15 86.3 86 61.6
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 3.5e-15 84.7 84 56.0
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 5.9e-15 84.0 84 56.0
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 1.0e-14 83.2 73 63.0
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 1.0e-14 83.2 73 63.0
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 1.0e-14 83.2 86 54.7
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 2.2e-14 82.0 82 59.8
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 3.8e-14 81.3 84 57.1
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.2e-13 78.2 86 52.3
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.2e-13 78.2 86 52.3
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.2e-13 78.2 86 52.3
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 4.2e-13 77.8 85 49.4
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.2e-12 76.3 91 49.5
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 1.2e-12 76.3 83 48.2
QL08p037020 Quercus lobata HOM05D007836 ORTHO05D009876 1.2e-12 76.3 86 53.5
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 2.1e-12 75.5 88 51.1
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 3.6e-12 74.7 83 53.0
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 8.0e-12 73.6 76 57.9
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 1.0e-11 73.2 83 55.4
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 1.0e-11 73.2 82 48.8
Sabra19G0118200 Salix brachista HOM05D007836 ORTHO05D009876 1.0e-11 73.2 82 47.6
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 1.4e-11 72.8 83 57.8
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 5.2e-11 70.9 71 57.7
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 8.8e-11 70.1 86 52.3
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 1.5e-10 69.3 81 44.4
CiPaw.03G168400 Carya illinoinensis HOM05D007836 ORTHO05D009876 2.0e-10 68.9 84 51.2
Migut.H01523 Erythranthe guttata HOM05D007836 ORTHO05D009876 2.0e-10 68.9 86 50.0
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 2.6e-10 68.6 89 47.2
FAN16G2096 Fragaria x ananassa HOM05D007836 ORTHO05D009876 9.7e-10 66.6 89 46.1
Atru.chr6.3083 Acer truncatum HOM05D007836 ORTHO05D009876 1.3e-09 66.2 99 47.5
Sed0016301 Sechium edule HOM05D007836 ORTHO05D009876 1.3e-09 66.2 80 48.8
CAN.G424.25 Capsicum annuum HOM05D007836 ORTHO05D009876 2.2e-09 65.5 84 53.6
Cfa014529 Carpinus fangiana HOM05D007836 ORTHO05D009876 2.2e-09 65.5 93 46.2
Solyc02g079240.1 Solanum lycopersicum HOM05D007836 ORTHO05D009876 4.8e-09 64.3 79 53.2
Gohir.D06G127700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.4e-08 62.8 62 58.1
Gorai.010G149400 Gossypium raimondii HOM05D007836 ORTHO05D009876 1.4e-08 62.8 62 58.1
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 2.4e-08 62.0 86 46.5
COL.COLO4_13657 Corchorus olitorius HOM05D007836 ORTHO05D009876 2.4e-08 62.0 85 45.9
Manes.13G152300 Manihot esculenta HOM05D007836 ORTHO05D009876 2.4e-08 62.0 81 44.4
Sopen02g024060 Solanum pennellii HOM05D007836 ORTHO05D009876 4.1e-08 61.2 92 47.8
Ciclev10018116m.g Citrus clementina HOM05D007836 ORTHO05D009876 5.3e-08 60.8 76 48.7
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 5.3e-08 60.8 73 49.3
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 1.6e-07 59.3 81 45.7
Gohir.A06G209201 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.6e-07 59.3 70 54.3
Lalb_Chr20g0122321 Lupinus albus HOM05D007836 ORTHO05D009876 1.6e-07 59.3 83 47.0
Thecc.02G170500 Theobroma cacao HOM05D007836 ORTHO05D009876 2.0e-07 58.9 86 47.7
Manes.12G082200 Manihot esculenta HOM05D007836 ORTHO05D009876 5.9e-07 57.4 68 48.5
THA.LOC104815653 Tarenaya hassleriana HOM05D000831 ORTHO05D000660 5.9e-07 57.4 53 60.4
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 7.7e-07 57.0 75 46.7
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 7.7e-07 57.0 80 45.0
AT4G10270 Arabidopsis thaliana HOM05D000831 ORTHO05D000660 1.0e-06 56.6 55 54.5
AUR62015588 Chenopodium quinoa HOM05D000831 ORTHO05D000660 1.0e-06 56.6 51 56.9
ClCG01G022480 Citrullus lanatus HOM05D007836 ORTHO05D009876 1.3e-06 56.2 83 47.0
Glyma.U031111 Glycine max HOM05D000831 ORTHO05D000660 1.3e-06 56.2 43 72.1
Aa31LG9G11730 Aethionema arabicum HOM05D000831 ORTHO05D000660 2.2e-06 55.5 43 60.5
AL6G44110 Arabidopsis lyrata HOM05D000831 ORTHO05D000660 2.2e-06 55.5 55 52.7
BraA09t38831Z Brassica rapa HOM05D000831 ORTHO05D000660 2.2e-06 55.5 55 52.7
CSS0015806 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 2.2e-06 55.5 42 66.7
CSS0022903 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 2.2e-06 55.5 42 66.7
CSS0049002 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 2.2e-06 55.5 42 66.7
MELO3C018769.2 Cucumis melo HOM05D000831 ORTHO05D000660 2.2e-06 55.5 74 45.9
CsaV3_7G004100 Cucumis sativus L. HOM05D000831 ORTHO05D000660 2.2e-06 55.5 74 45.9
Thhalv10009208m.g Eutrema salsugineum HOM05D000831 ORTHO05D000660 2.2e-06 55.5 55 50.9
Thhalv10009215m.g Eutrema salsugineum HOM05D000831 ORTHO05D000660 2.2e-06 55.5 55 52.7
Glyma.12G200700 Glycine max HOM05D000831 ORTHO05D000660 2.2e-06 55.5 72 48.6
Glyma.13G301800 Glycine max HOM05D000831 ORTHO05D000660 2.2e-06 55.5 78 44.9
AUR62029301 Chenopodium quinoa HOM05D000831 ORTHO05D000660 2.9e-06 55.1 51 54.9
Glyma.06G297800 Glycine max HOM05D000831 ORTHO05D000660 2.9e-06 55.1 43 69.8
Glyma.06G299000 Glycine max HOM05D000831 ORTHO05D000660 2.9e-06 55.1 43 69.8
Glyma.U031211 Glycine max HOM05D000831 ORTHO05D000660 2.9e-06 55.1 43 69.8
Potri.013G148300 Populus trichocarpa HOM05D007836 ORTHO05D009876 2.9e-06 55.1 81 45.7
CANSAT11G1378 Cannabis sativa HOM05D000831 ORTHO05D000660 3.8e-06 54.7 77 41.6
ClCG02G001340 Citrullus lanatus HOM05D000831 ORTHO05D000660 3.8e-06 54.7 74 45.9
Glyma.06G297600 Glycine max HOM05D000831 ORTHO05D000660 3.8e-06 54.7 43 69.8
Glyma.06G298600 Glycine max HOM05D000831 ORTHO05D000660 3.8e-06 54.7 43 69.8
Glyma.06G298700 Glycine max HOM05D000831 ORTHO05D000660 3.8e-06 54.7 43 69.8
Manes.03G117300 Manihot esculenta HOM05D000831 ORTHO05D000660 3.8e-06 54.7 43 67.4
Phvul.006G192700 Phaseolus vulgaris HOM05D007836 ORTHO05D009876 3.8e-06 54.7 74 44.6
Prupe.3G229900 Prunus persica HOM05D000831 ORTHO05D000660 3.8e-06 54.7 78 46.2
BcaB07g32975 Brassica carinata HOM05D000831 ORTHO05D000660 5.0e-06 54.3 55 52.7
A09p32920 Brassica napus HOM05D000831 ORTHO05D000660 5.0e-06 54.3 55 50.9
BraA09t38833Z Brassica rapa HOM05D000831 ORTHO05D000660 5.0e-06 54.3 55 50.9
BraA09t38834Z Brassica rapa HOM05D000831 ORTHO05D000660 5.0e-06 54.3 55 50.9
Cpa.g.sc12.26 Carica papaya HOM05D000831 ORTHO05D000660 5.0e-06 54.3 78 46.2
HanXRQChr17g0542271 Helianthus annuus HOM05D000831 ORTHO05D000660 5.0e-06 54.3 33 75.8
Lalb_Chr19g0135521 Lupinus albus HOM05D000831 ORTHO05D000660 5.0e-06 54.3 43 67.4
SHI24864 Sapria himalayana HOM05D007836 ORTHO05D009876 5.0e-06 54.3 71 43.7
TPR.G18070 Trifolium pratense HOM05D000831 ORTHO05D000660 5.0e-06 54.3 80 41.2
BcaB01g00890 Brassica carinata HOM05D000831 ORTHO05D000660 6.5e-06 53.9 55 50.9
BcaB07g32973 Brassica carinata HOM05D000831 ORTHO05D000660 6.5e-06 53.9 55 52.7
BcaB07g32979 Brassica carinata HOM05D000831 ORTHO05D000660 6.5e-06 53.9 55 52.7
CSS0037125 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 6.5e-06 53.9 42 64.3
CARHR256510 Cardamine hirsuta HOM05D000831 ORTHO05D000660 6.5e-06 53.9 55 52.7
MELO3C018770.2 Cucumis melo HOM05D000831 ORTHO05D000660 6.5e-06 53.9 74 44.6
CsaV3_7G004090 Cucumis sativus L. HOM05D000831 ORTHO05D000660 6.5e-06 53.9 74 44.6
Glyma.13G301400 Glycine max HOM05D000831 ORTHO05D000660 6.5e-06 53.9 88 40.9
Medtr2g089970 Medicago truncatula HOM05D000831 ORTHO05D000660 6.5e-06 53.9 45 64.4
Sp6g07170 Schrenkiella parvula HOM05D000831 ORTHO05D000660 6.5e-06 53.9 58 50.0
GSVIVG01030001001 Vitis vinifera HOM05D000831 ORTHO05D000660 6.5e-06 53.9 45 62.2
CANSAT11G1852 Cannabis sativa HOM05D000831 ORTHO05D000660 8.5e-06 53.5 42 64.3
Cpa.g.sc12.27 Carica papaya HOM05D000831 ORTHO05D000660 8.5e-06 53.5 45 64.4
COL.COLO4_13653 Corchorus olitorius HOM05D000831 ORTHO05D000660 8.5e-06 53.5 45 62.2
Glyma.12G200600 Glycine max HOM05D000831 ORTHO05D000660 8.5e-06 53.5 78 43.6
Glyma.13G301700 Glycine max HOM05D000831 ORTHO05D000660 8.5e-06 53.5 78 43.6
Phvul.005G108100 Phaseolus vulgaris HOM05D000831 ORTHO05D000660 8.5e-06 53.5 77 42.9
GSVIVG01029998001 Vitis vinifera HOM05D000831 ORTHO05D000660 8.5e-06 53.5 45 62.2


User provided reference genes

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