Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 0.0e+00 1118.2 562 100.0
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 4.2e-232 808.1 566 73.7
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 9.6e-229 797.0 558 73.8
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.3e-227 791.2 556 73.2
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 8.4e-225 783.9 560 72.3
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.1e-224 783.5 556 73.4
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.1e-224 783.5 500 79.0
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 9.3e-224 780.4 559 73.0
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.2e-223 780.0 556 72.7
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 2.1e-223 779.2 559 71.9
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 7.3e-221 770.8 566 70.8
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 9.6e-221 770.4 558 71.3
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 4.8e-220 768.1 568 68.8
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 4.8e-220 768.1 559 70.5
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 6.2e-220 767.7 559 70.3
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 6.2e-220 767.7 556 71.2
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 2.4e-219 765.8 574 69.5
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.4e-219 765.8 556 71.2
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 2.4e-219 765.8 556 71.0
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 9.9e-218 760.4 555 69.7
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.7e-215 752.3 574 68.1
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 6.0e-215 751.1 569 65.9
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 7.9e-215 750.7 566 68.0
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 9.6e-213 743.8 565 67.1
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.3e-212 743.4 555 70.1
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.6e-212 743.0 563 68.9
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.1e-212 742.7 563 68.4
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.8e-212 742.3 567 67.4
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 6.2e-212 741.1 569 65.4
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.1e-211 738.8 563 66.3
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.5e-210 736.5 558 69.9
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.5e-210 736.5 563 68.6
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 3.8e-209 731.9 555 69.0
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 3.8e-209 731.9 577 64.6
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 3.8e-209 731.9 568 67.1
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-208 730.3 564 67.0
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-208 730.3 564 67.0
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 3.2e-208 728.8 570 65.8
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.2e-208 728.8 554 68.8
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.2e-208 728.4 564 65.4
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 7.1e-208 727.6 558 68.3
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.3e-208 727.2 569 65.7
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.6e-207 726.5 564 65.4
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.1e-207 726.1 559 67.1
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 4.6e-207 724.9 556 68.9
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 6.0e-207 724.5 569 66.1
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.0e-206 722.2 551 69.0
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.8e-204 714.9 564 65.6
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.4e-203 713.4 562 68.1
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 2.4e-203 712.6 574 65.9
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.1e-203 711.8 557 65.7
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 3.4e-202 708.8 554 66.8
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.0e-201 707.2 575 65.6
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 5.0e-201 704.9 575 65.4
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 5.0e-201 704.9 575 65.4
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 5.0e-201 704.9 575 65.4
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-200 703.4 575 65.2
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.5e-200 702.6 577 64.6
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.2e-199 700.3 560 65.9
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.7e-199 699.1 557 65.5
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 6.1e-199 698.0 556 65.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.0e-198 697.2 554 66.4
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.8e-198 696.4 565 64.4
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.3e-198 696.0 577 64.8
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 6.7e-198 694.5 557 64.5
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.7e-198 694.1 591 61.6
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 4.3e-197 691.8 576 63.5
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 5.7e-197 691.4 563 64.5
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 9.7e-197 690.6 570 64.6
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 4.8e-196 688.3 573 64.7
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 6.3e-196 688.0 575 64.5
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 6.3e-196 688.0 563 63.6
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 4.5e-194 681.8 575 63.1
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 5.9e-194 681.4 567 66.3
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 5.0e-193 678.3 567 65.8
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 7.2e-192 674.5 562 64.2
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-191 673.7 562 63.2
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.6e-191 673.3 444 75.7
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 6.1e-191 671.4 567 62.1
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.0e-190 669.1 575 63.8
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 5.1e-190 668.3 573 62.7
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 5.7e-189 664.8 570 61.9
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.8e-188 662.5 558 63.3
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.4e-187 659.4 555 62.2
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 3.1e-187 659.1 555 63.4
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.1e-187 658.7 464 69.8
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.1e-187 658.7 558 62.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-186 657.1 555 62.9
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 2.2e-185 652.9 565 60.9
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 2.2e-185 652.9 562 62.1
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.9e-184 649.8 563 61.8
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 3.2e-184 649.0 572 60.1
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-182 643.7 567 60.5
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.0e-182 642.5 567 61.9
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 5.1e-182 641.7 564 59.6
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.1e-181 640.6 399 77.9
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 4.4e-181 638.6 573 61.4
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 9.7e-181 637.5 564 59.9
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 2.2e-180 636.3 565 60.0
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 4.8e-180 635.2 559 60.5
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 4.1e-179 632.1 437 72.3
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 2.0e-178 629.8 561 59.5
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.6e-178 629.4 558 60.2
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 2.9e-177 625.9 563 59.1
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-175 620.5 563 59.5
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 4.7e-175 618.6 560 58.8
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 4.0e-174 615.5 561 59.4
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.5e-173 613.6 563 59.7
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 2.0e-173 613.2 444 67.1
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.6e-173 612.8 574 57.1
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.3e-172 610.5 537 62.0
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 4.5e-170 602.1 566 55.7
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.3e-164 581.3 564 57.3
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 9.1e-163 577.8 402 70.6
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.6e-162 577.0 573 59.0
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.6e-162 577.0 338 81.4
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 3.8e-161 572.4 385 72.5
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.5e-160 570.5 591 54.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.4e-158 563.9 572 54.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.5e-154 549.3 550 54.5
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.0e-150 537.7 302 85.1
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.8e-150 537.0 525 53.9
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.4e-147 527.3 560 55.4
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.9e-144 516.9 564 51.4
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.3e-126 456.8 478 55.9
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.7e-122 443.4 452 47.1
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.3e-113 414.5 389 57.8
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.3e-97 360.5 380 46.1
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 3.3e-96 356.7 319 63.9
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.0e-93 347.4 501 44.9
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.3e-92 344.7 197 80.7
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 6.3e-87 325.9 369 48.5
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.1e-86 325.1 359 49.6
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-84 317.0 296 58.8
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.5e-83 312.8 209 68.4
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.2e-66 258.5 155 76.8
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 8.5e-60 235.7 209 59.8
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.4e-54 218.4 183 67.2
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 1.6e-53 214.9 275 50.5
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 3.0e-49 200.7 236 54.7
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 5.4e-38 163.3 276 40.2
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 4.5e-37 160.2 91 81.3
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.3e-36 157.9 92 79.3
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 8.3e-31 139.4 472 24.6
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-24 119.0 69 79.7
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-24 117.9 70 77.1
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.7e-23 115.2 70 75.7
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.7e-23 115.2 115 51.3
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 4.9e-23 113.6 79 67.1
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.5e-19 102.1 152 40.8
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.4e-17 95.5 180 31.1
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-16 91.3 51 84.3
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 1.1e-14 85.9 73 56.2
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.1e-12 77.0 89 49.4
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 3.3e-11 74.3 121 43.8
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.4e-06 58.9 49 57.1


User provided reference genes

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