Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 5.0e-110 401.7 315 100.0
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 1.3e-105 387.1 313 94.2
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 3.6e-92 342.4 315 82.2
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.1e-91 340.9 315 81.9
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.4e-91 340.5 315 81.3
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 6.8e-91 338.2 315 80.0
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 6.8e-91 338.2 318 79.2
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 6.8e-91 338.2 315 81.3
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 6.8e-91 338.2 315 81.3
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 8.9e-91 337.8 317 79.2
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 1.3e-89 334.0 317 79.2
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 1.7e-89 333.6 317 79.8
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 8.3e-89 331.3 323 77.7
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 1.1e-88 330.9 315 84.8
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 1.9e-88 330.1 317 82.6
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 1.9e-88 330.1 319 78.7
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 3.2e-88 329.3 318 77.7
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 4.1e-88 328.9 325 77.2
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 7.1e-88 328.2 317 77.9
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 9.2e-88 327.8 316 87.3
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 3.5e-87 325.9 317 78.5
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 4.6e-87 325.5 315 85.4
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 2.3e-86 323.2 318 76.7
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.0e-86 322.8 320 76.6
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 3.9e-86 322.4 323 75.2
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 5.1e-86 322.0 318 76.7
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.5e-85 320.5 316 79.7
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.9e-85 320.1 320 76.2
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 5.6e-85 318.5 316 80.7
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 1.6e-84 317.0 316 82.0
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 4.7e-84 315.5 307 79.5
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 8.1e-84 314.7 315 83.8
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.4e-83 313.2 307 79.2
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 8.9e-83 311.2 319 74.9
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 1.5e-82 310.5 305 79.3
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 1.5e-82 310.5 316 83.2
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.6e-82 309.7 317 80.1
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.8e-82 308.5 309 78.0
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.2e-79 300.8 317 82.0
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.6e-79 300.4 317 82.0
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.6e-79 300.4 318 80.8
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.7e-79 299.7 318 80.8
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 7.8e-79 298.1 317 80.8
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 1.0e-78 297.7 318 80.8
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.9e-77 293.5 316 81.3
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 8.1e-76 288.1 304 83.6
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 1.8e-75 287.0 318 80.2
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 3.4e-74 282.7 140 92.9
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 1.2e-71 274.2 140 90.0
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.5e-69 267.3 305 79.7
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 7.6e-66 255.0 278 78.1
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 8.4e-65 251.5 241 87.1
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 3.2e-64 249.6 240 87.1
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 5.4e-64 248.8 241 85.9
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 5.4e-64 248.8 241 86.3
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 9.3e-64 248.1 146 80.1
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 2.7e-63 246.5 242 86.0
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 7.9e-63 245.0 242 85.1
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 1.3e-62 244.2 313 71.2
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 1.8e-62 243.8 243 84.8
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 3.0e-62 243.0 317 71.6
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 3.0e-62 243.0 243 84.0
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.7e-62 241.9 145 77.2
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.7e-62 241.9 145 77.9
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 1.5e-61 240.7 243 84.8
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.5e-61 240.7 145 77.2
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.5e-61 240.7 243 83.5
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.9e-61 240.4 242 84.3
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 2.5e-61 240.0 145 77.2
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.5e-61 240.0 241 84.6
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 4.3e-61 239.2 241 84.2
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.6e-61 238.8 142 76.1
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.6e-61 238.8 142 76.1
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 7.4e-61 238.4 243 82.3
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 7.4e-61 238.4 317 71.6
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 7.4e-61 238.4 146 76.7
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.3e-60 237.7 241 83.8
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.3e-60 237.7 241 83.8
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 1.3e-60 237.7 143 75.5
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 2.8e-60 236.5 242 83.5
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 4.8e-60 235.7 242 83.5
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 74.8
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 6.2e-60 235.3 242 83.1
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 8.1e-60 235.0 242 82.6
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 8.1e-60 235.0 242 82.6
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 8.1e-60 235.0 242 82.6
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 8.1e-60 235.0 242 82.6
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 8.1e-60 235.0 242 82.6
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 8.1e-60 235.0 141 75.2
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.1e-59 234.6 144 74.3
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 1.4e-59 234.2 243 82.3
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.4e-59 234.2 243 82.3
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 1.4e-59 234.2 315 72.4
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 1.4e-59 234.2 142 75.4
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 3.1e-59 233.0 142 74.6
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 5.3e-59 232.3 142 73.2
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 1.2e-58 231.1 142 73.9
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 1.2e-58 231.1 142 72.5
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 1.5e-58 230.7 143 72.7
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 3.4e-58 229.6 142 73.9
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 7.6e-58 228.4 142 73.2
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 7.6e-58 228.4 142 73.2
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.3e-57 227.6 142 72.5
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.3e-57 227.6 142 72.5
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.3e-57 227.6 142 72.5
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.9e-57 226.5 317 70.0
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 8.4e-57 224.9 142 71.1
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-56 224.2 142 71.1
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.2e-55 221.1 266 71.8
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 2.7e-55 219.9 315 61.0
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 6.2e-52 208.8 316 69.9
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.8e-51 207.2 317 63.4
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.2e-47 194.5 329 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 7.9e-47 191.8 302 70.5
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 5.7e-45 185.7 307 64.5
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.4e-43 181.0 305 68.5
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 2.4e-43 180.3 144 56.9
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 9.0e-43 178.3 142 60.6
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 5.5e-40 169.1 115 67.0
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 8.2e-36 155.2 104 69.2
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.2e-33 147.1 205 71.2
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 2.2e-28 130.6 93 66.7
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 1.1e-27 128.3 110 52.7
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 1.8e-27 127.5 111 54.1
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.0e-25 121.7 305 36.7
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.3e-21 106.7 310 28.1
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.5e-16 90.5 310 26.1
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 8.0e-15 85.5 91 48.4
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 6.3e-12 75.9 77 54.5
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 3.1e-11 73.6 116 39.7
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 2.0e-10 70.9 111 39.6
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 1.7e-09 67.8 73 80.8
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 7.2e-08 62.4 135 75.6
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 3.6e-07 60.1 34 73.5
Cfa022092 Carpinus fangiana HOM05D000164 ORTHO05D121826 1.8e-06 57.8 84 39.3


User provided reference genes

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