Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.1e-226 789.6 413 100.0
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 2.9e-142 509.2 474 62.9
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.5e-138 494.6 485 61.0
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 1.0e-118 431.0 452 57.5
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 3.1e-115 419.5 453 55.8
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 1.1e-112 411.0 461 55.7
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 2.4e-112 409.8 459 55.1
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 7.0e-112 408.3 431 58.2
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 4.6e-111 405.6 459 54.9
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.2e-106 391.0 443 53.7
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.3e-105 387.5 332 63.0
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 7.8e-103 378.3 425 53.2
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 2.3e-102 376.7 444 51.4
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.5e-101 374.0 368 59.2
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 4.3e-101 372.5 454 51.5
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.1e-100 370.2 428 52.8
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 6.2e-100 368.6 445 50.8
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 8.1e-100 368.2 469 51.4
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 4.0e-99 365.9 360 59.4
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.0e-99 365.9 469 52.0
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 8.9e-99 364.8 453 49.9
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.3e-97 360.9 463 49.9
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.7e-97 360.5 439 52.4
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 3.2e-96 356.3 435 52.0
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 5.4e-96 355.5 366 56.8
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 9.2e-96 354.8 434 50.9
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 1.6e-95 354.0 466 50.2
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 1.7e-94 350.5 398 52.5
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.5e-93 347.4 391 54.5
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.5e-93 346.7 309 64.4
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 3.3e-93 346.3 457 48.8
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 5.6e-93 345.5 438 50.9
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 7.3e-93 345.1 468 49.4
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 2.8e-92 343.2 461 49.9
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 2.8e-92 343.2 461 51.2
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.4e-91 340.1 459 49.2
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 2.4e-91 340.1 460 49.6
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 3.1e-91 339.7 445 50.6
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 4.0e-91 339.3 453 50.3
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 5.2e-91 339.0 453 49.7
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 1.5e-90 337.4 450 49.6
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.0e-90 337.0 430 50.0
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 4.4e-90 335.9 435 51.5
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.7e-89 334.0 435 49.7
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.1e-88 331.3 427 50.4
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.6e-87 327.4 288 62.8
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 4.6e-87 325.9 462 47.4
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 2.3e-86 323.6 411 51.8
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 2.3e-86 323.6 444 47.3
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 8.7e-86 321.6 436 46.1
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 1.5e-85 320.9 466 45.7
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 1.5e-85 320.9 334 55.7
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.9e-85 320.5 440 46.4
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.5e-85 320.1 439 47.8
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 5.6e-85 318.9 431 49.4
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 1.3e-84 317.8 455 45.9
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.1e-84 317.0 455 46.6
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 4.0e-83 312.8 414 46.9
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 4.0e-83 312.8 437 47.4
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 6.9e-83 312.0 448 46.7
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 6.9e-83 312.0 371 51.5
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 2.0e-82 310.5 383 50.7
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.6e-82 310.1 518 42.3
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 1.3e-81 307.8 383 50.4
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 4.9e-81 305.8 443 45.6
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 5.4e-80 302.4 433 48.3
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 5.4e-80 302.4 403 46.7
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 9.3e-80 301.6 324 55.2
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.0e-78 298.1 438 47.0
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.6e-78 295.4 364 50.5
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 3.6e-76 289.7 437 43.7
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 1.4e-75 287.7 480 43.3
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 2.0e-74 283.9 451 44.3
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 7.6e-74 282.0 427 45.2
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.3e-73 281.2 376 48.9
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.9e-73 280.0 379 48.0
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.8e-73 279.6 336 52.1
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 3.8e-73 279.6 380 48.9
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.2e-71 274.6 452 43.1
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 2.7e-71 273.5 228 66.2
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 2.7e-71 273.5 278 58.3
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.3e-70 271.2 272 58.1
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.8e-70 270.8 271 57.9
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.8e-70 270.8 431 44.8
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.8e-70 270.8 427 45.0
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.3e-70 270.4 442 43.9
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 3.9e-70 269.6 413 43.6
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 4.3e-69 266.2 334 48.2
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.7e-68 263.1 431 43.9
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 3.7e-68 263.1 340 48.8
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 4.8e-68 262.7 609 36.3
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 6.2e-68 262.3 337 48.4
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.1e-67 261.5 271 57.6
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 2.0e-66 257.3 290 55.2
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 2.6e-66 256.9 232 63.4
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 7.6e-66 255.4 329 48.6
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.9e-65 253.4 468 41.2
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 8.4e-65 251.9 321 50.5
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 4.2e-64 249.6 314 50.0
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 1.0e-62 245.0 287 53.3
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 1.3e-62 244.6 401 43.1
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 2.3e-62 243.8 287 53.7
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 2.3e-62 243.8 287 53.7
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 3.0e-62 243.4 416 44.0
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.5e-61 241.1 341 45.7
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.3e-60 238.0 310 50.3
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.6e-60 237.7 293 52.2
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 8.2e-60 235.3 303 51.2
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 6.9e-59 232.3 285 50.2
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.2e-58 231.5 350 44.3
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 8.5e-57 225.3 432 39.8
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.1e-56 224.9 190 63.2
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 7.9e-55 218.8 291 46.7
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 1.8e-54 217.6 298 49.0
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 8.7e-54 215.3 417 39.1
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 7.4e-53 212.2 243 55.1
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.8e-52 210.3 255 50.2
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.9e-50 202.6 256 51.2
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 1.7e-49 201.1 298 46.3
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 5.0e-49 199.5 414 38.4
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.2e-48 196.8 234 53.8
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 7.2e-48 195.7 278 48.2
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.1e-47 194.1 306 43.8
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 7.9e-47 192.2 189 57.1
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.6e-42 177.2 273 43.2
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 1.4e-40 171.4 195 52.3
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.0e-38 165.2 106 82.1
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 2.6e-37 160.6 152 59.2
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 5.7e-37 159.5 201 45.3
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.3e-36 158.3 261 43.3
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 6.3e-36 156.0 456 31.8
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.8e-35 154.5 451 33.0
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 9.1e-35 152.1 247 44.9
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 2.1e-31 141.0 239 39.7
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 2.7e-31 140.6 196 46.9
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.7e-31 140.6 214 44.4
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 3.6e-31 140.2 137 57.7
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 8.0e-31 139.0 70 94.3
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 3.0e-30 137.1 157 47.8
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.3e-28 131.7 112 64.3
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.7e-28 131.3 129 58.1
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 7.0e-27 125.9 257 37.4
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.7e-25 121.3 72 80.6
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.5e-25 119.4 72 79.2
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.5e-24 118.2 142 48.6
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 9.4e-24 115.5 189 42.9
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.0e-22 110.5 70 75.7
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.5e-18 97.1 238 35.3
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.5e-18 96.7 238 35.3
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.5e-18 96.7 238 35.3
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.3e-17 95.1 77 64.9
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.2e-17 94.4 107 46.7
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.0e-17 93.2 253 33.6
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 1.5e-16 91.7 227 34.4
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.2e-12 77.8 80 51.2
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.9e-12 76.6 94 56.4
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 1.0e-09 68.9 142 43.7
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.3e-09 68.6 83 48.2
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.7e-09 68.2 83 48.2
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 1.7e-09 68.2 100 37.0
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.5e-08 64.3 294 26.2
Cre01.g021750 Chlamydomonas reinhardtii HOM05D004030 ORTHO05D004952 9.5e-08 62.4 113 33.6
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 2.8e-07 60.8 89 42.7
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 5.2e-06 56.6 68 45.6


User provided reference genes

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