Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 5.0e-41 170.6 83 100.0
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.9e-25 118.2 75 72.0
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 2.9e-25 118.2 82 72.0
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.5e-24 114.0 79 68.4
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.2e-23 112.8 80 68.8
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.6e-23 112.5 74 68.9
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 2.1e-23 112.1 77 66.2
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.7e-23 111.7 80 67.5
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 2.7e-23 111.7 69 75.4
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 3.6e-23 111.3 81 66.7
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 4.7e-23 110.9 81 67.9
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 6.1e-23 110.5 78 65.4
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 6.1e-23 110.5 78 64.1
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 6.1e-23 110.5 73 68.5
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 8.0e-23 110.2 77 67.5
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 8.0e-23 110.2 77 67.5
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 8.0e-23 110.2 77 67.5
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 1.0e-22 109.8 88 62.5
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.8e-22 109.0 78 65.4
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 2.3e-22 108.6 80 63.8
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 2.3e-22 108.6 77 63.6
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 3.0e-22 108.2 81 65.4
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 3.0e-22 108.2 81 65.4
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.0e-22 108.2 79 65.8
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 3.0e-22 108.2 73 67.1
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 4.0e-22 107.8 74 66.2
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 5.2e-22 107.5 78 64.1
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 5.2e-22 107.5 78 62.8
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 6.7e-22 107.1 76 68.4
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 6.7e-22 107.1 72 70.8
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 8.8e-22 106.7 82 64.6
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 8.8e-22 106.7 78 64.1
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 8.8e-22 106.7 79 62.0
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.5e-21 105.9 74 64.9
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.0e-21 105.5 78 64.1
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 2.0e-21 105.5 79 64.6
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 2.0e-21 105.5 74 64.9
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 2.6e-21 105.1 79 63.3
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 2.6e-21 105.1 79 63.3
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 2.6e-21 105.1 72 66.7
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 2.6e-21 105.1 79 62.0
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.3e-21 104.8 78 62.8
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 3.3e-21 104.8 78 62.8
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 5.7e-21 104.0 79 62.0
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 7.5e-21 103.6 77 64.9
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 9.7e-21 103.2 55 80.0
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 1.3e-20 102.8 73 65.8
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.3e-20 102.8 79 64.6
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.3e-20 102.8 48 89.6
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.3e-20 102.8 81 59.3
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 1.3e-20 102.8 51 82.4
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 1.3e-20 102.8 51 82.4
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.7e-20 102.4 48 87.5
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 2.2e-20 102.1 78 61.5
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 2.2e-20 102.1 78 57.7
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 2.2e-20 102.1 70 68.6
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 2.8e-20 101.7 81 61.7
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 2.8e-20 101.7 51 82.4
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.8e-20 101.7 71 66.2
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 3.7e-20 101.3 78 57.7
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 3.7e-20 101.3 78 64.1
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 3.7e-20 101.3 78 65.4
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 3.7e-20 101.3 71 66.2
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 4.8e-20 100.9 53 79.2
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 4.8e-20 100.9 79 60.8
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 4.8e-20 100.9 71 66.2
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 4.8e-20 100.9 79 60.8
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 6.3e-20 100.5 53 79.2
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 6.3e-20 100.5 76 63.2
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 6.3e-20 100.5 71 70.4
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 8.2e-20 100.1 79 59.5
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 8.2e-20 100.1 79 59.5
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 8.2e-20 100.1 79 59.5
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 8.2e-20 100.1 76 64.5
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 8.2e-20 100.1 53 77.4
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.1e-19 99.8 78 61.5
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 1.1e-19 99.8 79 60.8
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.1e-19 99.8 79 58.2
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.1e-19 99.8 67 70.1
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.1e-19 99.8 79 62.0
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.4e-19 99.4 80 57.5
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.4e-19 99.4 79 62.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.8e-19 99.0 48 85.4
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.8e-19 99.0 53 77.4
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.8e-19 99.0 51 78.4
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.8e-19 99.0 79 60.8
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 1.8e-19 99.0 79 57.0
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.8e-19 99.0 79 59.5
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.8e-19 99.0 68 64.7
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 2.4e-19 98.6 48 83.3
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.4e-19 98.6 55 74.5
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.4e-19 98.6 51 80.4
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.4e-19 98.6 51 80.4
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 3.1e-19 98.2 79 59.5
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 3.1e-19 98.2 72 61.1
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 4.1e-19 97.8 53 77.4
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 4.1e-19 97.8 53 77.4
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 5.3e-19 97.4 72 62.5
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 7.0e-19 97.1 72 62.5
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 7.0e-19 97.1 81 59.3
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 9.1e-19 96.7 48 83.3
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 9.1e-19 96.7 71 59.2
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 9.1e-19 96.7 80 61.2
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.2e-18 96.3 48 81.2
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 1.2e-18 96.3 71 59.2
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.2e-18 96.3 66 65.2
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 1.2e-18 96.3 46 87.0
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.6e-18 95.9 69 62.3
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.5e-18 94.7 66 60.6
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 3.5e-18 94.7 45 84.4
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 4.5e-18 94.4 66 60.6
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 5.9e-18 94.0 63 61.9
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 5.9e-18 94.0 67 59.7
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 5.9e-18 94.0 67 59.7
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.9e-18 94.0 73 60.3
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.9e-18 94.0 73 60.3
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 5.9e-18 94.0 63 69.8
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 7.7e-18 93.6 67 58.2
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 7.7e-18 93.6 67 58.2
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 7.7e-18 93.6 67 58.2
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 7.7e-18 93.6 66 60.6
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 7.7e-18 93.6 49 81.6
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 7.7e-18 93.6 64 64.1
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.0e-17 93.2 67 59.7
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.0e-17 93.2 48 77.1
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.0e-17 93.2 73 58.9
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 1.3e-17 92.8 70 61.4
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 2.2e-17 92.0 66 63.6
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.2e-17 92.0 66 60.6
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.8e-17 91.3 72 61.1
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 3.8e-17 91.3 45 80.0
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 6.5e-17 90.5 64 64.1
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 6.5e-17 90.5 48 75.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.1e-16 89.7 48 75.0
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 1.5e-16 89.4 44 81.8
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.9e-16 89.0 51 74.5
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.9e-16 89.0 69 59.4
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.9e-16 89.0 69 59.4
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 4.2e-16 87.8 51 70.6
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 5.5e-16 87.4 69 60.9
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.2e-15 86.3 44 77.3
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.2e-15 86.3 78 53.8
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.6e-15 85.9 62 58.1
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.6e-15 85.9 41 82.9
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.6e-15 85.9 44 77.3
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.6e-15 85.9 44 77.3
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 8.0e-15 83.6 86 45.3
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 5.2e-14 80.9 43 76.7
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 8.8e-14 80.1 41 75.6
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 1.2e-13 79.7 73 52.1
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 8.3e-12 73.6 51 66.7
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 5.9e-10 67.4 48 62.5
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.7e-09 65.9 51 54.9
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 5.2e-06 54.3 57 50.9


User provided reference genes

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