Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.5e-139 499.6 268 100.0
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 9.3e-89 330.9 287 68.3
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 9.0e-84 314.3 272 68.4
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 2.2e-82 309.7 281 67.6
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.0e-66 257.7 278 57.2
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.0e-66 257.7 250 60.4
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 2.9e-66 256.1 247 62.3
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 6.5e-66 255.0 279 55.2
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.4e-65 253.8 269 58.0
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 5.5e-65 251.9 277 57.8
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 5.5e-65 251.9 237 63.7
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 2.1e-64 250.0 247 61.5
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 4.6e-64 248.8 268 59.0
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 6.0e-64 248.4 283 56.5
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 7.9e-64 248.1 238 60.5
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.0e-63 247.7 271 55.4
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 2.3e-63 246.5 277 56.0
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 3.9e-63 245.7 294 55.1
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 3.9e-63 245.7 249 57.4
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 5.1e-63 245.4 250 58.8
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.5e-62 243.8 264 58.7
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 3.3e-62 242.7 264 58.3
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 4.3e-62 242.3 281 56.2
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 5.7e-62 241.9 217 62.2
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 7.4e-62 241.5 267 57.7
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 9.7e-62 241.1 219 62.1
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 9.7e-62 241.1 262 56.5
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 1.6e-61 240.4 254 57.5
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 4.8e-61 238.8 274 55.5
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 6.3e-61 238.4 219 63.5
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 6.3e-61 238.4 269 56.1
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.1e-60 237.7 213 65.7
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 1.1e-60 237.7 217 62.2
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 1.4e-60 237.3 254 58.3
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.8e-60 236.9 219 60.7
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 3.1e-60 236.1 271 57.9
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 4.1e-60 235.7 260 55.8
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 4.1e-60 235.7 273 54.6
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 5.3e-60 235.3 260 56.5
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 6.9e-60 235.0 286 54.9
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 9.0e-60 234.6 267 55.8
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 1.5e-59 233.8 264 56.4
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 2.0e-59 233.4 253 55.3
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 4.5e-59 232.3 283 54.8
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 7.7e-59 231.5 276 55.1
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 7.7e-59 231.5 259 57.1
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.3e-58 230.7 256 55.1
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.3e-58 230.7 269 56.9
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.3e-58 230.7 269 56.9
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 1.7e-58 230.3 206 62.6
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 2.9e-58 229.6 268 55.2
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 3.8e-58 229.2 281 54.1
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 5.0e-58 228.8 218 61.0
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 8.5e-58 228.0 199 65.8
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 8.5e-58 228.0 258 55.4
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 1.9e-57 226.9 269 55.0
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 3.2e-57 226.1 223 59.6
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 4.2e-57 225.7 221 59.7
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 5.5e-57 225.3 210 64.8
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 5.5e-57 225.3 315 49.8
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 1.2e-56 224.2 283 56.2
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 2.1e-56 223.4 208 64.9
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 2.1e-56 223.4 271 54.6
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 2.1e-56 223.4 271 55.4
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 2.1e-56 223.4 271 55.4
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 2.7e-56 223.0 271 53.9
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 3.6e-56 222.6 204 64.2
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 4.6e-56 222.2 271 55.0
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 4.6e-56 222.2 202 62.4
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 6.1e-56 221.9 220 60.9
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 7.9e-56 221.5 273 56.4
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.3e-55 219.9 279 56.3
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.1e-55 218.8 271 55.4
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 8.8e-55 218.0 259 53.7
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 8.8e-55 218.0 221 61.1
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 3.3e-54 216.1 213 61.5
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.7e-54 215.3 285 52.3
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 5.7e-54 215.3 225 56.9
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.7e-53 213.8 264 51.9
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 1.8e-52 210.3 225 56.4
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 3.1e-52 209.5 231 56.3
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 9.1e-52 208.0 276 55.4
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 2.0e-51 206.8 266 51.9
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 3.4e-51 206.1 248 55.2
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.0e-50 204.5 220 55.0
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.0e-50 204.5 220 55.0
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 1.9e-49 200.3 200 57.5
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 6.1e-48 195.3 212 58.0
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 6.1e-48 195.3 218 52.3
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 3.0e-47 193.0 242 52.5
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 7.4e-46 188.3 261 48.3
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 7.4e-46 188.3 261 47.1
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 9.7e-46 188.0 267 46.8
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 2.8e-45 186.4 181 61.3
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 6.3e-45 185.3 207 54.1
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 3.1e-44 183.0 201 58.2
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 5.9e-43 178.7 187 56.1
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 3.8e-42 176.0 206 54.9
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 1.1e-41 174.5 203 54.2
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 8.0e-40 168.3 260 45.4
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 6.7e-39 165.2 138 68.1
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 8.8e-39 164.9 190 53.7
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.1e-38 164.5 180 56.7
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.8e-36 157.1 276 43.8
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 8.5e-34 148.3 235 45.5
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 3.2e-33 146.4 212 48.6
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 1.2e-32 144.4 191 47.6
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 1.0e-31 141.4 181 49.2
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 1.2e-30 137.9 256 41.8
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 1.5e-30 137.5 133 61.7
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 5.7e-30 135.6 230 41.7
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 2.2e-29 133.7 111 64.9
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 1.1e-28 131.3 180 45.6
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 1.6e-27 127.5 238 41.2
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 5.9e-27 125.6 146 56.2
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 5.9e-27 125.6 146 56.2
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.9e-25 120.6 102 65.7
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 9.4e-25 118.2 131 55.7
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.4e-23 114.4 197 41.1
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 1.8e-23 114.0 121 58.7
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 1.5e-22 110.9 154 46.8
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 2.2e-21 107.1 224 39.7
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 8.3e-21 105.1 225 39.6
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 7.0e-20 102.1 102 60.8
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 1.0e-18 98.2 112 50.0
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.5e-17 94.4 74 68.9
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 3.6e-16 89.7 194 39.2
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 8.0e-16 88.6 148 40.5
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 3.2e-12 76.6 71 60.6
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 3.5e-11 73.2 171 29.2
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 7.3e-09 65.5 60 58.3
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.5e-06 57.8 69 58.0
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 2.0e-06 57.4 47 61.7
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 3.4e-06 56.6 138 40.6
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 4.4e-06 56.2 35 74.3
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 5.8e-06 55.8 57 56.1
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 9.8e-06 55.1 65 49.2


User provided reference genes

Program Settings