Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 0.0e+00 1246.1 785 100.0
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.8e-185 653.7 815 56.8
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 2.7e-160 570.1 759 55.7
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.1e-157 560.5 834 51.8
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.1e-150 538.1 756 50.4
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.5e-134 484.6 807 48.2
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 7.3e-134 482.3 804 46.0
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.3e-132 477.2 827 43.3
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 8.9e-132 475.3 775 46.6
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 8.9e-132 475.3 821 43.8
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 6.4e-130 469.2 764 50.5
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.4e-129 468.0 837 43.5
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.3e-127 461.5 877 45.6
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 1.5e-123 448.0 765 44.7
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 1.3e-119 434.9 799 47.6
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 9.6e-118 428.7 838 48.6
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 5.4e-113 412.9 807 42.0
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 7.8e-112 409.1 834 41.5
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.3e-111 408.3 824 48.4
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.9e-110 404.4 824 45.9
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.3e-110 403.7 800 43.4
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 9.0e-108 395.6 814 42.0
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.0e-107 394.4 826 47.1
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 1.9e-105 387.9 801 45.3
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 4.2e-105 386.7 823 39.7
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 7.1e-105 386.0 803 44.5
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 9.3e-105 385.6 826 45.2
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.8e-103 381.3 829 39.0
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.8e-103 381.3 755 42.9
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 5.1e-103 379.8 854 38.6
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.5e-102 378.3 826 44.4
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.5e-102 378.3 838 42.1
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 2.5e-102 377.5 830 41.1
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.5e-102 377.5 833 41.2
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 5.6e-102 376.3 817 46.6
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.3e-101 375.2 800 39.8
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 1.3e-101 375.2 819 43.8
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.6e-101 374.8 814 42.9
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.8e-101 373.2 821 42.4
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.1e-100 372.1 831 43.4
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.3e-100 369.8 813 40.6
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 5.3e-100 369.8 819 44.1
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 5.3e-100 369.8 778 42.0
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 6.9e-100 369.4 815 40.9
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 9.0e-100 369.0 779 41.7
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.5e-99 368.2 782 38.9
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 2.6e-99 367.5 819 39.8
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 9.9e-99 365.5 859 38.8
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.4e-97 361.7 831 40.7
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 3.9e-95 353.6 799 41.6
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.1e-94 352.1 808 42.7
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 7.4e-94 349.4 815 39.3
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.6e-93 348.2 829 43.4
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.8e-93 347.4 802 38.2
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 3.7e-93 347.1 792 43.2
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.2e-93 346.3 845 37.4
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 8.2e-93 345.9 767 38.6
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.0e-92 343.6 847 39.4
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.5e-91 340.1 820 41.5
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 5.8e-91 339.7 777 36.7
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 1.0e-90 339.0 837 41.2
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-90 338.2 810 38.5
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.2e-90 337.8 791 37.9
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 3.5e-88 330.5 854 43.3
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 7.9e-88 329.3 848 38.7
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.0e-87 328.9 860 41.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 2.3e-87 327.8 771 39.7
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.1e-87 326.6 706 41.4
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 5.1e-87 326.6 850 36.5
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 1.5e-86 325.1 796 48.6
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.3e-86 323.6 774 36.6
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.2e-85 321.2 805 38.0
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.6e-83 314.3 765 41.7
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 2.6e-83 314.3 782 40.4
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.0e-82 312.4 806 35.5
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 5.0e-82 310.1 811 39.0
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.9e-81 308.1 829 43.1
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 3.2e-81 307.4 795 37.6
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 4.2e-81 307.0 822 42.7
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 5.5e-81 306.6 816 36.3
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 7.9e-80 302.8 785 34.8
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.4e-79 302.0 770 35.7
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.8e-79 301.6 819 35.0
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 6.7e-79 299.7 770 38.8
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 9.7e-78 295.8 677 41.2
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 6.3e-77 293.1 810 36.0
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 8.2e-77 292.7 801 36.8
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 8.2e-77 292.7 736 40.6
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.8e-76 291.6 747 42.4
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 5.3e-76 290.0 807 36.1
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 6.9e-76 289.7 797 36.9
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 2.2e-74 284.6 832 40.1
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 2.5e-73 281.2 828 35.3
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.2e-72 278.9 839 42.4
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.0e-71 275.8 744 36.4
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.4e-71 275.4 828 35.4
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.6e-70 271.2 838 44.0
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 7.4e-70 269.6 815 35.7
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 6.3e-69 266.5 743 36.5
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 8.2e-69 266.2 832 35.1
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.1e-68 265.8 765 41.0
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.1e-68 265.8 679 37.1
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 2.6e-67 261.2 827 35.4
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 5.9e-67 260.0 754 40.5
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 2.9e-66 257.7 733 38.3
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 6.5e-66 256.5 825 38.8
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 7.2e-65 253.1 792 34.3
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.2e-64 252.3 785 38.3
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 1.6e-64 251.9 782 36.2
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 3.7e-61 240.7 849 35.6
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 6.3e-61 240.0 771 32.8
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.0e-58 232.6 728 32.7
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.2e-58 231.5 768 31.5
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 6.5e-58 229.9 771 32.0
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 2.5e-57 228.0 826 33.9
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 7.2e-57 226.5 799 36.2
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 2.0e-54 218.4 743 36.2
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.7e-53 215.3 845 36.8
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.4e-52 212.2 823 33.3
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 5.3e-52 210.3 778 30.7
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.2e-49 201.1 801 32.8
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 5.7e-46 190.3 654 30.3
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.4e-44 184.9 778 27.9
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.6e-43 182.2 258 49.2
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 5.9e-43 180.3 761 33.8
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.5e-41 175.6 180 58.9
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 6.1e-40 170.2 748 30.9
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.0e-40 169.9 816 28.6
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 1.0e-39 169.5 870 30.6
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.0e-39 169.5 880 29.4
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.4e-39 169.1 716 30.2
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 2.3e-39 168.3 859 27.4
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 5.2e-39 167.2 816 29.8
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 5.2e-39 167.2 697 30.4
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 1.5e-38 165.6 696 30.3
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 1.5e-38 165.6 300 43.3
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.6e-38 164.9 787 27.4
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.6e-38 164.9 783 28.1
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 2.2e-37 161.8 810 29.9
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 6.3e-37 160.2 717 30.1
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 8.3e-37 159.8 833 34.1
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 1.1e-36 159.5 810 27.5
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 3.1e-36 157.9 807 27.5
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 3.1e-36 157.9 807 27.5
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.7e-34 152.1 595 32.3
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 8.6e-34 149.8 166 57.2
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.3e-33 147.9 141 57.4
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 5.6e-33 147.1 230 46.5
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 5.6e-33 147.1 216 46.3
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 2.8e-32 144.8 203 47.3
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 1.0e-31 142.9 208 44.2
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.5e-30 139.0 483 34.2
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.6e-30 138.3 539 33.6
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 9.8e-30 136.3 844 27.0
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.2e-29 135.2 353 36.0
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 4.9e-29 134.0 278 41.0
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 3.6e-24 117.9 257 36.2
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 4.7e-24 117.5 241 37.8
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 5.2e-23 114.0 531 33.9
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 7.5e-22 110.2 139 56.8
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.7e-18 99.0 106 58.5
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.1e-15 88.2 191 37.7
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.0e-15 87.8 779 25.3
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 2.6e-14 85.1 128 44.5
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 8.3e-13 80.1 191 37.7
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.0e-10 71.6 342 27.2
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.6e-08 65.9 53 73.6
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 6.2e-08 63.9 74 56.8
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.1e-07 61.6 183 31.1
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 5.8e-06 57.4 106 38.7


User provided reference genes

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