Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 6.7e-269 930.2 521 100.0
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 6.7e-168 594.7 562 60.3
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 2.0e-156 556.6 532 59.2
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.6e-156 556.2 534 59.2
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.6e-151 539.7 563 56.1
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.3e-150 537.3 563 56.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 4.4e-143 512.3 573 52.0
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.6e-140 503.1 569 51.5
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.0e-139 501.1 539 55.8
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 5.2e-128 462.2 545 51.4
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 8.8e-128 461.5 617 46.0
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.2e-127 461.1 598 48.7
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.8e-125 453.8 559 48.8
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.1e-125 453.0 557 49.7
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.7e-124 449.9 559 49.9
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 6.6e-123 445.3 545 51.2
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.5e-122 444.1 581 47.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 2.5e-122 443.4 583 47.0
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 3.3e-122 443.0 574 47.2
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 5.5e-122 442.2 564 48.6
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.1e-121 440.3 570 49.1
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 8.9e-120 434.9 557 48.3
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 1.7e-118 430.6 552 49.3
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.4e-117 426.8 573 46.4
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 3.2e-117 426.4 576 48.3
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 9.2e-117 424.9 572 47.0
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 2.7e-116 423.3 582 47.1
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 4.5e-116 422.5 567 48.1
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.0e-115 421.4 579 47.3
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.7e-115 420.6 562 47.9
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.5e-114 417.5 667 42.6
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 3.6e-113 412.9 565 48.1
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.1e-112 409.8 565 47.6
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 8.9e-112 408.3 569 45.7
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.7e-110 404.1 567 46.9
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 3.7e-110 402.9 554 46.0
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.1e-109 401.4 560 45.9
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.4e-109 401.0 570 44.2
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.4e-109 399.1 560 47.3
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 7.0e-109 398.7 555 45.9
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 9.2e-109 398.3 602 44.9
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 6.0e-108 395.6 571 45.4
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 7.8e-108 395.2 533 48.4
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.0e-107 394.8 566 46.8
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 2.3e-107 393.7 602 43.4
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 3.9e-107 392.9 552 44.6
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 7.3e-106 388.7 565 45.1
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 9.5e-106 388.3 569 45.9
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 8.9e-104 381.7 537 45.4
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.2e-103 381.3 560 45.2
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.2e-103 381.3 570 48.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.2e-103 381.3 475 49.9
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.5e-103 380.9 562 42.7
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 3.4e-103 379.8 539 51.0
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 9.2e-101 371.7 561 43.0
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.2e-100 371.3 596 44.1
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.1e-100 370.5 562 46.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 7.8e-100 368.6 567 43.0
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.3e-99 367.1 565 44.6
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 3.0e-99 366.7 600 43.8
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.1e-99 365.9 372 53.0
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 8.6e-99 365.2 569 45.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.5e-98 364.4 568 42.8
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 5.6e-98 362.5 601 46.3
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.4e-96 357.8 566 44.0
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 5.8e-95 352.4 541 44.2
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 2.9e-94 350.1 564 42.9
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 6.4e-94 349.0 560 41.6
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 2.4e-93 347.1 562 43.1
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 9.2e-93 345.1 526 44.1
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 3.9e-91 339.7 566 41.2
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 4.3e-90 336.3 558 40.7
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.1e-89 334.0 413 47.9
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.8e-89 333.6 562 44.7
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 4.7e-89 332.8 578 45.3
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.8e-88 330.9 550 41.8
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 3.1e-88 330.1 560 40.4
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.5e-87 327.8 562 45.7
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.0e-87 327.4 564 41.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.4e-87 326.6 545 46.4
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 3.4e-87 326.6 565 41.4
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 2.9e-86 323.6 572 41.6
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 4.9e-86 322.8 538 39.2
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 9.3e-85 318.5 544 40.6
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 9.3e-85 318.5 544 40.6
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 1.2e-84 318.2 568 40.3
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 7.8e-84 315.5 589 37.9
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 2.3e-83 313.9 485 44.9
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 5.1e-83 312.8 555 39.6
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.3e-81 308.1 546 40.3
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 6.2e-81 305.8 589 39.9
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.4e-80 303.9 453 44.4
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.2e-79 301.6 458 42.1
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.7e-78 297.7 546 38.1
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 1.7e-78 297.7 314 52.9
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 1.6e-76 291.2 547 38.8
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 2.7e-76 290.4 566 38.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 4.6e-76 289.7 560 38.8
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 2.3e-75 287.3 572 38.5
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 6.6e-75 285.8 468 42.3
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.1e-73 280.8 604 35.9
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 8.1e-73 278.9 298 52.0
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 5.4e-69 266.2 593 36.8
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.0e-68 262.7 559 39.9
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 8.7e-67 258.8 568 35.9
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.9e-66 257.7 563 37.7
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 6.2e-65 252.7 287 49.8
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.5e-63 248.1 506 37.4
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.5e-63 248.1 506 37.4
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 3.5e-60 236.9 387 43.4
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.9e-58 231.1 473 39.3
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 6.5e-54 216.1 396 39.4
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 5.3e-48 196.4 334 41.3
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 2.3e-43 181.0 440 33.4
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.1e-42 178.7 586 29.4
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.0e-38 165.6 251 43.8
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 8.5e-38 162.5 474 36.1
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-37 161.8 475 36.2
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.9e-37 161.4 498 29.5
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.4e-35 155.2 400 34.8
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 4.0e-27 127.1 159 40.9
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 7.0e-24 116.3 214 38.8
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.5e-23 113.6 279 36.6
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 6.1e-20 103.2 253 34.8
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.1e-16 92.4 125 33.6
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.6e-15 88.6 214 36.0
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.6e-15 88.6 240 32.5
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 2.2e-14 84.7 49 73.5
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 3.8e-14 84.0 221 33.5
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 1.4e-11 75.5 103 46.6
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 1.4e-11 75.5 103 46.6
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 1.4e-11 75.5 103 46.6
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 1.4e-11 75.5 103 46.6
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 1.4e-11 75.5 103 46.6
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 1.4e-11 75.5 103 46.6
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.8e-11 75.1 195 39.0
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.8e-11 75.1 115 44.3
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 5.2e-11 73.6 242 25.6
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 2.6e-10 71.2 150 42.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 4.9e-09 67.0 100 46.0
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.4e-08 65.5 125 37.6
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 7.0e-08 63.2 43 67.4
SGA_v2.0_scaffold31G12601 Striga asiatica HOM05D018969 ORTHO05D029317 1.7e-06 58.5 88 42.0


User provided reference genes

Program Settings