Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 4.8e-177 624.4 317 100.0
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 5.2e-139 498.0 315 78.4
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 4.9e-129 464.9 322 73.3
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.0e-123 445.3 315 73.3
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.3e-118 430.3 316 69.6
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 5.0e-118 428.3 315 67.9
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 3.3e-117 425.6 316 69.6
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 6.2e-116 421.4 312 67.9
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.1e-115 420.6 317 68.5
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 3.1e-115 419.1 316 69.6
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 5.2e-115 418.3 315 66.0
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.5e-114 416.8 279 74.9
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 2.6e-114 416.0 328 66.8
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 4.4e-114 415.2 311 68.8
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.7e-113 413.3 315 65.1
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 2.2e-113 412.9 278 75.2
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 8.3e-113 411.0 315 67.0
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.1e-112 410.6 318 65.7
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.4e-112 409.5 315 65.1
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 7.1e-112 407.9 316 64.9
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 9.2e-112 407.5 316 67.4
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 2.7e-111 406.0 315 63.8
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 6.0e-111 404.8 278 69.4
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 7.8e-111 404.4 316 63.9
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.0e-110 404.1 316 66.8
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.0e-110 404.1 315 63.8
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.3e-110 403.7 316 64.2
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.7e-110 403.3 316 63.6
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 7.3e-109 397.9 317 62.8
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 7.3e-109 397.9 313 62.0
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.2e-108 397.1 316 62.3
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 8.1e-108 394.4 318 62.6
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 2.3e-107 392.9 316 62.3
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 3.1e-107 392.5 316 61.7
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 8.9e-107 391.0 315 60.6
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.0e-106 389.8 316 62.0
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 4.4e-106 388.7 316 63.3
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 4.4e-106 388.7 313 62.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 5.8e-106 388.3 315 61.9
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 7.6e-106 387.9 315 61.0
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.8e-105 385.6 315 59.7
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 4.9e-105 385.2 316 61.1
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.4e-104 382.9 315 59.7
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 4.1e-104 382.1 316 60.4
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 9.2e-104 380.9 278 69.1
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 9.2e-104 380.9 313 61.3
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 2.7e-103 379.4 316 60.8
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 2.7e-103 379.4 315 61.0
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 2.7e-103 379.4 316 61.1
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.7e-103 379.4 359 56.3
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 6.0e-103 378.3 315 60.6
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 6.0e-103 378.3 319 60.8
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.0e-102 377.5 330 57.0
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.7e-102 376.7 315 61.0
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.7e-102 376.7 315 61.0
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 3.9e-102 375.6 300 63.7
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 1.9e-101 373.2 315 60.6
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.9e-101 373.2 313 61.3
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 4.3e-101 372.1 267 67.4
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.2e-100 370.5 315 59.0
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.6e-100 370.2 312 59.3
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 2.8e-100 369.4 312 59.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 2.8e-100 369.4 313 58.1
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 4.7e-100 368.6 315 60.3
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 4.7e-100 368.6 279 62.7
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 6.2e-100 368.2 312 60.3
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 8.1e-100 367.9 307 60.3
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 3.1e-99 365.9 315 59.0
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 8.9e-99 364.4 314 58.9
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.5e-98 363.6 315 58.7
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 2.0e-98 363.2 316 59.5
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 4.4e-98 362.1 278 65.5
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 7.6e-98 361.3 315 58.4
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.7e-97 360.1 315 59.7
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.4e-97 358.2 316 56.6
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 4.2e-96 355.5 282 62.1
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.2e-95 354.0 311 57.9
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 6.0e-95 351.7 316 58.2
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 8.7e-94 347.8 315 57.1
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.9e-93 346.7 331 53.5
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 2.1e-92 343.2 327 53.5
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 3.6e-92 342.4 315 55.9
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 1.2e-90 337.4 274 60.2
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 5.8e-90 335.1 318 55.3
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 6.4e-89 331.6 314 54.5
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 8.4e-89 331.3 271 59.4
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.9e-88 330.1 282 59.6
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.2e-88 329.3 319 53.6
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.2e-87 327.4 314 53.8
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.3e-86 323.9 278 60.8
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 3.9e-86 322.4 313 52.1
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 5.1e-86 322.0 314 52.5
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 6.7e-86 321.6 314 52.9
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.5e-85 320.5 315 54.3
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 7.4e-85 318.2 314 52.2
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 9.6e-85 317.8 314 51.9
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 9.6e-85 317.8 314 52.2
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 9.6e-85 317.8 314 51.9
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 1.3e-84 317.4 247 65.6
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.6e-84 317.0 314 52.2
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 2.1e-84 316.6 314 51.6
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 2.1e-84 316.6 253 62.1
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 8.1e-84 314.7 314 52.2
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.1e-83 314.3 314 52.2
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.4e-83 313.9 314 52.2
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.4e-83 313.9 314 51.6
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 3.1e-83 312.8 314 51.9
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 3.1e-83 312.8 314 51.9
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 5.3e-83 312.0 237 67.1
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 9.0e-83 311.2 287 56.8
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 2.6e-82 309.7 284 54.6
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.3e-81 307.4 220 69.1
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.8e-78 297.0 251 61.4
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.5e-77 293.1 247 60.3
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 7.4e-77 291.6 219 64.8
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.3e-76 290.8 316 50.9
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 8.1e-76 288.1 273 55.3
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 2.4e-75 286.6 276 51.4
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 7.6e-74 281.6 247 60.3
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 4.2e-72 275.8 328 46.0
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.0e-70 271.2 321 44.5
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 4.1e-59 232.6 197 60.4
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 9.4e-56 221.5 178 63.5
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 1.6e-47 194.1 282 42.2
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.0e-46 191.4 191 50.8
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.8e-46 190.7 194 54.1
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.1e-39 167.2 144 58.3
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 2.4e-35 153.7 106 64.2
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 4.2e-32 142.9 112 62.5
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.0e-22 111.7 120 48.3
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 3.0e-14 83.6 319 27.3
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.3e-09 68.2 138 35.5


User provided reference genes

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