Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.8e-33 144.8 107 100.0
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.7e-20 101.7 106 58.5
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.0e-19 98.2 109 71.6
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.9e-16 89.4 101 61.4
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.9e-16 89.4 100 54.0
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.6e-15 86.3 100 52.0
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 6.7e-14 80.9 102 45.1
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.1e-13 80.1 101 46.5
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.5e-13 79.7 109 43.1
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 3.3e-13 78.6 106 45.3
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 3.3e-13 78.6 102 42.2
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 5.6e-13 77.8 103 47.6
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 9.6e-13 77.0 102 45.1
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 6.2e-12 74.3 98 62.2
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 2.4e-11 72.4 104 42.3
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 3.1e-11 72.0 99 47.5
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 4.0e-11 71.6 112 62.5
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 1.2e-10 70.1 101 52.5
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.2e-10 70.1 98 44.9
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 1.2e-10 70.1 96 45.8
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.5e-10 69.7 96 43.8
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 1.5e-10 69.7 96 43.8
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 2.0e-10 69.3 100 40.0
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.0e-10 69.3 108 41.7
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 2.0e-10 69.3 95 43.2
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 2.6e-10 68.9 101 45.5
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 3.4e-10 68.6 102 42.2
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 3.4e-10 68.6 107 43.0
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 3.4e-10 68.6 103 44.7
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 4.5e-10 68.2 96 44.8
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 4.5e-10 68.2 96 44.8
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.8e-10 67.8 104 42.3
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 7.6e-10 67.4 106 42.5
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 7.6e-10 67.4 96 42.7
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 7.6e-10 67.4 101 45.5
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.0e-09 67.0 96 43.8
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.2e-09 65.9 101 42.6
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 2.2e-09 65.9 104 40.4
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 2.2e-09 65.9 104 40.4
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 2.2e-09 65.9 104 40.4
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.2e-09 65.9 100 42.0
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 2.2e-09 65.9 95 41.1
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 2.2e-09 65.9 101 43.6
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 2.2e-09 65.9 97 41.2
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 2.2e-09 65.9 105 42.9
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.9e-09 65.5 101 42.6
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 2.9e-09 65.5 106 43.4
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 2.9e-09 65.5 106 41.5
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 2.9e-09 65.5 92 45.7
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 2.9e-09 65.5 96 43.8
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.9e-09 65.5 101 44.6
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 2.9e-09 65.5 104 39.4
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 2.9e-09 65.5 103 43.7
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 3.8e-09 65.1 106 42.5
Migut.M00649 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.8e-09 65.1 89 47.2
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 3.8e-09 65.1 105 41.0
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 4.9e-09 64.7 104 39.4
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.9e-09 64.7 103 47.6
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 4.9e-09 64.7 97 41.2
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 4.9e-09 64.7 99 41.4
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 4.9e-09 64.7 99 42.4
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 4.9e-09 64.7 103 42.7
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 6.5e-09 64.3 101 40.6
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 1.1e-08 63.5 101 40.6
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 1.1e-08 63.5 101 39.6
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-08 63.5 101 39.6
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 1.1e-08 63.5 101 39.6
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.1e-08 63.5 109 41.3
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.4e-08 63.2 94 43.6
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 1.4e-08 63.2 111 36.9
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 1.4e-08 63.2 104 44.2
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.9e-08 62.8 101 38.6
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.9e-08 62.8 101 38.6
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.9e-08 62.8 115 37.4
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.9e-08 62.8 118 40.7
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.9e-08 62.8 118 40.7
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 1.9e-08 62.8 100 39.0
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.9e-08 62.8 97 40.2
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.5e-08 62.4 104 35.6
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 2.5e-08 62.4 122 36.9
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.5e-08 62.4 103 40.8
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 2.5e-08 62.4 101 40.6
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 2.5e-08 62.4 101 40.6
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.5e-08 62.4 117 35.0
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 2.5e-08 62.4 108 42.6
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.5e-08 62.4 109 38.5
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 3.2e-08 62.0 102 41.2
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 4.2e-08 61.6 102 40.2
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 4.2e-08 61.6 98 48.0
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 4.2e-08 61.6 93 41.9
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 4.2e-08 61.6 101 39.6
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 5.5e-08 61.2 118 44.1
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 5.5e-08 61.2 98 37.8
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 7.1e-08 60.8 104 35.6
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 7.1e-08 60.8 128 35.9
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 7.1e-08 60.8 106 44.3
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 7.1e-08 60.8 115 36.5
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 9.3e-08 60.5 106 35.8
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 9.3e-08 60.5 104 35.6
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 9.3e-08 60.5 92 41.3
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 9.3e-08 60.5 118 40.7
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 9.3e-08 60.5 100 38.0
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 1.2e-07 60.1 95 40.0
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 1.6e-07 59.7 104 37.5
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.6e-07 59.7 104 36.5
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 1.6e-07 59.7 104 37.5
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.6e-07 59.7 104 36.5
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 1.6e-07 59.7 115 38.3
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.6e-07 59.7 95 40.0
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.6e-07 59.7 99 37.4
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.6e-07 59.7 99 37.4
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 1.6e-07 59.7 97 38.1
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 2.1e-07 59.3 105 40.0
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 2.1e-07 59.3 111 36.9
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 2.1e-07 59.3 104 37.5
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 2.1e-07 59.3 104 35.6
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 2.1e-07 59.3 104 35.6
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 2.1e-07 59.3 94 40.4
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.1e-07 59.3 101 44.6
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 2.7e-07 58.9 104 37.5
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.7e-07 58.9 95 40.0
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.7e-07 58.9 95 40.0
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.7e-07 58.9 109 40.4
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 2.7e-07 58.9 98 39.8
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.7e-07 58.9 101 49.5
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.5e-07 58.5 109 40.4
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 4.6e-07 58.2 104 36.5
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.6e-07 58.2 112 34.8
Nn3g20788 Nelumbo nucifera HOM05D004022 ORTHO05D004090 4.6e-07 58.2 99 38.4
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 4.6e-07 58.2 112 34.8
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 6.0e-07 57.8 106 38.7
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.9e-07 57.4 103 39.8
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 7.9e-07 57.4 113 36.3
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 7.9e-07 57.4 113 36.3
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 1.0e-06 57.0 32 90.6
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 1.0e-06 57.0 32 90.6
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.3e-06 56.6 106 56.6
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 1.8e-06 56.2 100 36.0
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.8e-06 56.2 94 37.2
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.8e-06 56.2 34 79.4
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.3e-06 55.8 37 78.4
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 2.3e-06 55.8 41 73.2
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 3.9e-06 55.1 104 33.7
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 5.1e-06 54.7 104 33.7
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 6.7e-06 54.3 99 37.4
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 8.7e-06 53.9 32 81.2


User provided reference genes

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