Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.9e-198 695.7 350 100.0
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 3.1e-193 678.3 350 97.4
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 1.0e-148 530.4 351 76.9
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 2.1e-141 506.1 328 76.5
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.8e-137 493.0 350 73.7
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 4.7e-133 478.4 306 78.1
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 1.0e-132 477.2 274 83.6
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 8.9e-132 474.2 306 77.1
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 4.4e-131 471.9 351 70.1
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 9.8e-131 470.7 311 75.2
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.4e-129 466.8 300 77.7
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 2.5e-126 456.1 314 72.3
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 8.0e-125 451.1 300 72.3
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 8.0e-125 451.1 310 73.2
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.8e-124 449.9 333 70.3
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 5.2e-124 448.4 301 74.1
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 5.2e-124 448.4 305 72.8
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 6.8e-124 448.0 301 73.1
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 6.8e-124 448.0 301 73.8
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 6.8e-124 448.0 299 73.9
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 8.9e-124 447.6 279 76.7
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.2e-123 447.2 301 74.1
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.5e-123 446.8 313 72.5
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.5e-123 446.8 304 73.4
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 2.0e-123 446.4 334 68.3
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 3.4e-123 445.7 310 73.2
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.4e-123 445.7 350 64.9
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 4.4e-123 445.3 265 81.1
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 5.8e-123 444.9 300 74.0
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 7.5e-123 444.5 318 70.1
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 9.8e-123 444.1 350 65.4
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 1.3e-122 443.7 351 65.2
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.3e-122 443.7 321 70.7
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.3e-122 443.7 299 73.2
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.2e-122 443.0 353 64.6
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 2.9e-122 442.6 321 70.4
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 2.9e-122 442.6 301 73.8
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.7e-122 442.2 353 64.3
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 3.7e-122 442.2 310 72.6
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 6.4e-122 441.4 279 77.1
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 1.4e-121 440.3 301 73.4
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.9e-121 439.9 339 64.6
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.9e-121 439.9 272 78.3
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 1.9e-121 439.9 300 71.7
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.4e-121 439.5 279 76.7
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.2e-121 439.1 337 67.1
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.2e-121 439.1 279 76.3
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 4.1e-121 438.7 280 75.0
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 5.4e-121 438.3 317 70.3
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 7.0e-121 438.0 351 64.7
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 7.0e-121 438.0 335 66.9
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 7.0e-121 438.0 334 66.8
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 9.2e-121 437.6 304 72.7
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.2e-120 437.2 337 66.8
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.6e-120 436.8 279 76.0
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 2.0e-120 436.4 300 70.7
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.7e-120 436.0 350 62.6
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.7e-120 436.0 276 77.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 3.5e-120 435.6 298 72.8
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.5e-120 435.6 279 76.0
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 3.5e-120 435.6 278 75.9
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 4.6e-120 435.3 284 72.9
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.6e-120 435.3 300 72.0
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 6.0e-120 434.9 276 76.4
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 6.0e-120 434.9 277 75.8
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 1.3e-119 433.7 301 69.8
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.3e-119 433.7 274 75.5
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.7e-119 433.3 294 73.5
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 3.0e-119 432.6 309 69.9
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 3.9e-119 432.2 280 76.4
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 3.9e-119 432.2 337 67.1
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 6.6e-119 431.4 298 71.8
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 6.6e-119 431.4 296 69.6
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.1e-118 430.6 349 63.9
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.1e-118 430.6 324 65.4
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.5e-118 430.3 272 75.7
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.9e-118 429.9 281 73.7
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.9e-118 429.9 278 75.9
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.9e-118 429.9 301 71.8
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.5e-118 429.5 304 69.7
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 2.5e-118 429.5 333 66.4
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.3e-118 429.1 301 70.4
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.3e-118 429.1 274 75.9
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 4.3e-118 428.7 300 71.7
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 5.6e-118 428.3 281 73.3
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 5.6e-118 428.3 317 68.8
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 7.3e-118 427.9 281 73.0
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.2e-117 427.2 304 70.7
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.2e-117 427.2 300 71.0
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 1.6e-117 426.8 297 70.0
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.6e-117 426.8 306 70.6
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.6e-117 425.6 300 69.3
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 3.6e-117 425.6 272 76.1
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 4.7e-117 425.2 309 68.3
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.7e-117 425.2 277 74.0
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 4.7e-117 425.2 315 70.2
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 8.0e-117 424.5 285 72.6
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 8.0e-117 424.5 312 67.6
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 8.0e-117 424.5 312 67.6
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 8.0e-117 424.5 342 64.6
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.1e-116 424.1 330 65.5
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 1.1e-116 424.1 277 73.6
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 1.4e-116 423.7 312 67.6
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.8e-116 423.3 277 73.3
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.8e-116 423.3 300 69.7
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 2.3e-116 422.9 274 73.0
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 2.3e-116 422.9 309 67.0
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 2.3e-116 422.9 277 73.6
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 2.3e-116 422.9 277 73.3
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 3.1e-116 422.5 312 67.3
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.8e-116 421.4 272 75.4
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 1.2e-115 420.6 287 71.1
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 1.2e-115 420.6 278 73.7
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 2.0e-115 419.9 298 67.1
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 5.8e-115 418.3 287 70.7
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 2.9e-114 416.0 305 68.2
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.4e-113 413.7 278 70.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 4.1e-113 412.1 277 70.4
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 3.5e-112 409.1 298 67.1
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 6.0e-112 408.3 280 70.7
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.0e-111 407.5 287 69.3
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.6e-111 404.4 288 68.1
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.9e-110 403.3 330 62.4
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 7.3e-110 401.4 319 64.9
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 9.5e-110 401.0 288 66.7
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 6.2e-109 398.3 280 68.2
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 3.1e-108 396.0 294 69.4
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 3.1e-108 396.0 291 65.3
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 5.8e-107 391.7 277 69.7
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 7.5e-107 391.3 265 70.9
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.9e-106 389.4 277 67.5
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 5.4e-105 385.2 315 64.4
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 9.2e-105 384.4 254 75.6
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 1.2e-104 384.0 316 61.7
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.3e-103 380.6 295 63.4
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 1.5e-99 367.1 271 66.8
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 5.8e-99 365.2 275 63.6
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.7e-98 363.6 314 60.5
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 2.7e-96 356.3 276 63.8
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 2.6e-91 339.7 276 60.1
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 2.1e-88 330.1 186 86.6
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 8.4e-82 308.1 222 70.7
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.4e-81 307.4 274 53.6
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 6.0e-80 302.0 290 53.4
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 3.3e-78 296.2 282 55.3
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 6.2e-77 292.0 212 68.4
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 6.9e-76 288.5 288 55.6
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 3.0e-71 273.1 183 72.7
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.3e-66 257.7 218 64.2
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.4e-65 254.2 174 76.4
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.5e-62 243.4 239 57.7
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 7.4e-54 215.3 314 42.7
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 9.7e-54 214.9 218 56.0
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.1e-52 209.9 176 61.4
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 4.2e-49 199.5 164 59.1
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 5.1e-47 192.6 286 43.0
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 7.4e-46 188.7 175 56.6
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 6.1e-40 169.1 187 51.3
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 8.2e-37 158.7 90 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 5.3e-36 156.0 138 58.7
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 2.3e-31 140.6 77 85.7
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.0e-31 140.2 278 30.9
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.2e-24 118.2 75 77.3
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.7e-24 117.1 67 86.6
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 8.0e-24 115.5 169 42.6
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.0e-22 110.9 164 41.5
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.8e-20 104.4 89 57.3
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.5e-17 94.0 66 74.2
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.0e-14 84.3 84 52.4
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 9.5e-09 65.5 173 27.7
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 1.6e-08 64.7 59 50.8
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 8.0e-08 62.4 81 43.2


User provided reference genes

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