Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 7.0e-167 590.5 290 100.0
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 1.8e-77 293.5 257 58.4
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 4.5e-73 278.9 296 48.6
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 8.5e-72 274.6 300 52.3
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 3.6e-70 269.2 288 47.9
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 2.3e-69 266.5 293 51.2
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 9.5e-63 244.6 291 44.3
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 2.0e-60 236.9 283 45.6
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 4.1e-58 229.2 299 43.5
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 2.7e-57 226.5 274 46.4
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 1.0e-56 224.6 295 44.1
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 1.0e-56 224.6 236 49.6
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 3.3e-55 219.5 283 44.5
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 1.6e-54 217.2 307 41.0
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 8.9e-53 211.5 303 43.6
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.2e-52 211.1 282 42.6
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 9.8e-52 208.0 295 41.7
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.3e-51 207.6 295 41.7
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 2.2e-51 206.8 233 48.5
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.4e-50 203.4 295 41.7
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 5.4e-50 202.2 290 40.3
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 4.6e-49 199.1 293 39.2
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 1.0e-48 198.0 293 40.3
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 2.3e-48 196.8 230 45.2
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 6.6e-48 195.3 295 40.3
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.5e-47 194.1 256 43.4
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 3.3e-47 193.0 277 39.7
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 4.3e-47 192.6 259 40.2
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 5.6e-47 192.2 303 37.3
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 7.3e-47 191.8 248 43.5
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 1.2e-46 191.0 286 40.2
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 3.6e-46 189.5 281 42.3
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.0e-45 188.0 248 43.1
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.8e-45 187.2 291 41.2
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 8.9e-45 184.9 297 38.0
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 1.2e-44 184.5 256 39.5
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 2.0e-44 183.7 291 36.4
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 2.6e-44 183.3 261 42.5
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 2.6e-44 183.3 281 36.7
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 7.5e-44 181.8 298 36.6
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 9.8e-44 181.4 286 37.1
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 3.7e-43 179.5 292 37.3
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 4.1e-42 176.0 293 34.8
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 5.4e-42 175.6 273 36.3
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 1.2e-41 174.5 294 38.1
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 2.0e-41 173.7 255 38.4
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 6.0e-41 172.2 290 35.2
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 1.3e-40 171.0 261 37.2
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 1.7e-40 170.6 293 35.2
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 6.6e-40 168.7 303 35.0
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 1.1e-39 167.9 196 44.4
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 1.5e-39 167.5 293 33.8
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 4.3e-39 166.0 248 36.3
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 7.3e-39 165.2 255 37.3
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 6.2e-38 162.2 346 36.7
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 4.0e-37 159.5 237 40.1
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 1.5e-36 157.5 255 35.3
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 3.4e-36 156.4 252 35.3
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.4e-36 156.4 288 34.0
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.4e-36 156.4 283 33.2
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.3e-35 154.5 213 44.1
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.7e-35 154.1 271 35.1
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 1.7e-35 154.1 271 35.8
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 2.2e-35 153.7 195 43.1
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 2.4e-34 150.2 287 35.2
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 2.4e-34 150.2 285 35.8
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 3.2e-34 149.8 256 35.2
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 3.2e-34 149.8 256 35.2
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 7.1e-34 148.7 297 35.0
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 4.6e-33 146.0 236 36.0
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 6.0e-33 145.6 264 35.6
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 2.3e-32 143.7 303 34.0
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 2.3e-32 143.7 201 40.3
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 3.0e-32 143.3 241 35.3
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 3.0e-32 143.3 256 36.3
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 3.9e-32 142.9 237 35.9
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 6.6e-32 142.1 187 43.9
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 8.6e-32 141.7 244 37.3
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 1.9e-31 140.6 235 36.6
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 2.1e-30 137.1 242 34.3
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 3.1e-29 133.3 267 31.1
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 5.2e-29 132.5 187 40.1
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 2.0e-28 130.6 210 37.6
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 4.9e-27 125.9 278 31.3
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.1e-26 124.8 286 28.7
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 2.1e-25 120.6 156 37.2
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 4.7e-22 109.4 135 43.0
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 2.4e-21 107.1 169 39.1
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.2e-20 104.8 150 38.7
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 4.2e-18 96.3 111 45.9
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 3.1e-13 80.1 122 37.7
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 6.7e-08 62.4 98 39.8
BcaB08g34583 Brassica carinata HOM05D001524 ORTHO05D001392 1.5e-07 61.2 225 24.0
Thhalv10022994m.g Eutrema salsugineum HOM05D001524 ORTHO05D001392 4.3e-07 59.7 208 24.5
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 5.6e-07 59.3 235 24.7
Glyma.16G214300 Glycine max HOM05D000005 ORTHO05D001392 5.6e-07 59.3 223 25.1
Phvul.007G040900 Phaseolus vulgaris HOM05D001524 ORTHO05D001392 6.2e-06 55.8 228 25.0


User provided reference genes

Program Settings