Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 3.5e-62 241.5 126 100.0
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 3.0e-29 132.1 132 61.4
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 1.6e-22 109.8 129 56.6
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 5.6e-20 101.3 119 48.7
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 2.4e-18 95.9 120 50.0
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 5.8e-17 91.3 129 47.3
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 6.4e-16 87.8 119 52.1
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 6.4e-16 87.8 91 56.0
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 1.4e-15 86.7 123 46.3
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.1e-14 82.8 109 45.0
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.7e-14 82.4 120 45.0
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 3.5e-14 82.0 67 68.7
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.0e-13 80.5 122 43.4
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 1.0e-13 80.5 110 47.3
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.0e-13 80.5 109 45.0
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 1.3e-13 80.1 119 45.4
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 1.3e-13 80.1 120 48.3
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.3e-13 80.1 90 58.9
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.7e-13 79.7 130 41.5
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.7e-13 79.7 120 45.0
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 8.7e-13 77.4 90 52.2
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.1e-12 77.0 105 49.5
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.1e-12 77.0 42 85.7
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 1.5e-12 76.6 120 43.3
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 1.5e-12 76.6 53 73.6
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.5e-12 76.6 74 60.8
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 1.9e-12 76.3 68 61.8
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.5e-12 75.9 129 45.7
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.5e-12 75.9 83 55.4
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.5e-12 75.9 57 71.9
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 3.3e-12 75.5 116 44.0
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 4.3e-12 75.1 123 44.7
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 4.3e-12 75.1 103 51.5
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 5.6e-12 74.7 125 40.0
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 5.6e-12 74.7 115 53.0
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 5.6e-12 74.7 119 45.4
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 5.6e-12 74.7 103 50.5
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 7.4e-12 74.3 121 43.0
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.4e-12 74.3 124 44.4
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.4e-12 74.3 124 44.4
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 7.4e-12 74.3 57 70.2
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 7.4e-12 74.3 88 53.4
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 1.3e-11 73.6 120 43.3
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.6e-11 73.2 124 43.5
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.6e-11 73.2 118 43.2
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.6e-11 73.2 39 84.6
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 2.1e-11 72.8 93 49.5
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.1e-11 72.8 125 44.0
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.1e-11 72.8 125 44.0
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.6e-11 72.0 58 69.0
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 4.8e-11 71.6 114 40.4
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 8.1e-11 70.9 122 45.1
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 1.4e-10 70.1 121 46.3
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 2.4e-10 69.3 88 50.0
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 3.1e-10 68.9 74 58.1
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 4.0e-10 68.6 50 72.0
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 5.3e-10 68.2 119 42.9
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 5.3e-10 68.2 50 74.0
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 6.9e-10 67.8 83 49.4
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 6.9e-10 67.8 103 44.7
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.5e-09 66.6 119 42.9
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 1.5e-09 66.6 120 42.5
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.0e-09 66.2 119 42.9
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 2.6e-09 65.9 119 41.2
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.4e-09 65.5 119 42.0
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 4.5e-09 65.1 119 42.9
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 4.5e-09 65.1 119 42.9
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 4.5e-09 65.1 107 36.4
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 5.8e-09 64.7 96 44.8
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 9.9e-09 63.9 65 52.3
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 9.9e-09 63.9 80 52.5
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 1.7e-08 63.2 51 66.7
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 1.7e-08 63.2 82 53.7
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 2.9e-08 62.4 119 37.8
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 3.8e-08 62.0 76 44.7
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 3.8e-08 62.0 108 42.6
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 3.8e-08 62.0 89 41.6
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 6.4e-08 61.2 79 53.2
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 6.4e-08 61.2 58 65.5
Cc05_g05520 Coffea canephora HOM05D007156 ORTHO05D003871 8.4e-08 60.8 117 40.2
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 8.4e-08 60.8 88 38.6
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 8.4e-08 60.8 75 48.0
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.4e-07 60.1 41 65.9
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 1.4e-07 60.1 91 47.3
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.9e-07 59.7 116 37.1
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 2.4e-07 59.3 76 43.4
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 3.2e-07 58.9 87 46.0
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 3.2e-07 58.9 85 44.7
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 4.2e-07 58.5 86 41.9
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 4.2e-07 58.5 86 41.9
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 4.2e-07 58.5 40 62.5
Nitab4.5_0001134g0060 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.5e-07 58.2 91 48.4
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 7.1e-07 57.8 42 54.8
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 7.1e-07 57.8 39 61.5
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 7.1e-07 57.8 64 46.9
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.2e-06 57.0 92 39.1
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 1.2e-06 57.0 73 43.8
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 1.2e-06 57.0 73 43.8
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.2e-06 57.0 90 41.1
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.2e-06 57.0 78 39.7
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.2e-06 57.0 78 39.7
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 1.6e-06 56.6 89 40.4
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 1.6e-06 56.6 63 57.1
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.6e-06 56.6 73 42.5
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 1.6e-06 56.6 65 44.6
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 2.1e-06 56.2 82 43.9
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 2.7e-06 55.8 61 45.9
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 2.7e-06 55.8 46 54.3
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.7e-06 55.8 98 37.8
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.7e-06 55.8 76 48.7
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 2.7e-06 55.8 76 48.7
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 3.5e-06 55.5 82 42.7
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 3.5e-06 55.5 76 48.7
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 4.6e-06 55.1 35 68.6
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 4.6e-06 55.1 87 42.5
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 4.6e-06 55.1 57 56.1
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 4.6e-06 55.1 55 50.9
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 4.6e-06 55.1 56 46.4
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 6.0e-06 54.7 73 45.2
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 6.0e-06 54.7 122 41.0
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 6.0e-06 54.7 58 51.7
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 6.0e-06 54.7 55 49.1
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 7.9e-06 54.3 80 43.8
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 7.9e-06 54.3 125 34.4
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 7.9e-06 54.3 95 41.1
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 7.9e-06 54.3 104 36.5
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 7.9e-06 54.3 84 33.3
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 7.9e-06 54.3 63 41.3


User provided reference genes

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