Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 1.4e-176 622.9 311 100.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.3e-139 499.2 311 80.4
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.2e-135 486.9 312 79.8
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 6.4e-134 481.1 343 71.7
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 7.9e-132 474.2 311 76.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 1.4e-128 463.4 323 74.0
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 3.3e-122 442.2 281 76.5
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.8e-121 439.1 295 75.3
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.1e-120 437.2 288 76.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.1e-120 437.2 274 79.9
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 3.1e-120 435.6 285 78.2
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.3e-120 434.9 288 76.0
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.2e-119 433.7 248 83.1
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.5e-119 433.3 318 71.7
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 2.0e-119 433.0 318 71.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.6e-119 432.6 255 82.0
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.3e-118 430.3 282 77.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.3e-118 430.3 280 77.9
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 3.8e-118 428.7 258 79.5
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.5e-117 426.0 322 66.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 3.2e-117 425.6 311 71.7
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 4.2e-117 425.2 284 74.6
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.5e-117 424.9 295 73.2
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 5.5e-117 424.9 272 76.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 7.1e-117 424.5 259 79.5
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.2e-116 423.7 291 73.2
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 6.1e-116 421.4 296 73.6
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.0e-115 420.6 282 73.4
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.0e-115 420.6 287 73.9
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.3e-115 420.2 326 67.5
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.3e-115 420.2 287 72.5
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.8e-115 419.9 246 81.7
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 2.3e-115 419.5 309 70.2
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.9e-115 418.7 285 74.7
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 3.9e-115 418.7 270 76.7
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 3.9e-115 418.7 247 80.6
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 5.1e-115 418.3 265 77.7
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 8.7e-115 417.5 246 81.7
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.1e-114 417.2 284 73.9
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.9e-114 416.4 290 72.1
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.9e-114 416.4 242 83.1
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.9e-114 416.4 263 76.0
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 7.4e-114 414.5 242 82.6
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 9.7e-114 414.1 247 79.8
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 9.7e-114 414.1 296 71.3
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 9.7e-114 414.1 276 76.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.3e-113 413.7 293 71.3
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.3e-113 413.7 293 71.3
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.6e-113 413.3 304 69.1
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.6e-113 413.3 293 72.7
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.6e-113 413.3 317 68.1
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.6e-113 413.3 272 75.7
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.2e-113 412.9 244 81.6
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 2.8e-113 412.5 275 75.3
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.7e-113 412.1 293 71.0
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 6.3e-113 411.4 313 66.1
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 6.3e-113 411.4 248 77.4
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.1e-112 410.6 287 73.2
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.1e-112 410.6 292 71.2
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.1e-112 410.6 286 73.4
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.4e-112 409.5 285 69.5
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.4e-112 409.5 248 77.0
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.1e-112 409.1 245 79.2
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 3.1e-112 409.1 304 68.1
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.1e-112 408.7 287 69.7
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 4.1e-112 408.7 285 73.0
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 6.9e-112 407.9 297 69.0
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.2e-111 407.1 285 71.2
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.5e-111 406.8 270 75.6
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.0e-111 406.4 283 70.3
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 5.9e-111 404.8 282 72.3
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 7.7e-111 404.4 277 70.4
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.7e-110 403.3 287 68.6
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.7e-110 403.3 243 77.4
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.8e-110 402.1 242 77.3
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 6.5e-110 401.4 287 69.0
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.9e-109 399.8 288 67.4
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.2e-108 397.1 303 65.7
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.2e-108 397.1 269 71.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.6e-108 396.7 306 66.3
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.7e-108 396.0 256 74.6
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.4e-107 393.7 271 70.8
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 7.4e-106 387.9 247 73.3
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.3e-105 387.1 299 63.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 2.2e-105 386.3 244 73.8
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 3.7e-105 385.6 305 64.9
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 6.3e-105 384.8 300 63.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.1e-104 384.0 247 72.9
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 5.3e-104 381.7 296 68.9
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 6.9e-104 381.3 271 69.7
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 3.4e-103 379.0 260 72.3
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.1e-101 374.0 284 66.2
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.1e-100 369.8 316 63.3
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.9e-99 365.5 212 83.0
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 6.7e-99 364.8 370 55.1
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.4e-96 357.1 216 82.4
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.4e-96 356.3 278 65.8
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 3.1e-96 355.9 251 68.1
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 5.9e-95 351.7 256 69.9
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.3e-94 350.5 290 62.8
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 5.0e-94 348.6 423 48.5
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.5e-93 346.3 303 60.1
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 5.5e-93 345.1 249 68.3
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.9e-91 339.0 215 71.2
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 3.3e-90 335.9 245 69.4
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.1e-88 330.9 256 60.2
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.1e-88 330.9 242 68.2
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-86 324.3 240 67.1
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 2.9e-86 322.8 276 57.6
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 2.4e-80 303.1 226 66.8
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 5.9e-79 298.5 315 55.6
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.5e-78 294.7 231 64.1
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.0e-74 283.5 246 53.7
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.4e-74 282.3 216 61.1
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.8e-73 279.6 168 80.4
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 2.8e-65 253.1 179 69.8
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.8e-64 250.4 251 51.8
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 3.2e-64 249.6 159 75.5
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 7.0e-64 248.4 167 71.3
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 9.2e-64 248.1 245 48.2
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-63 247.3 224 58.9
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 3.3e-61 239.6 145 79.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 8.9e-59 231.5 206 61.2
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.3e-57 227.6 242 43.4
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.7e-54 217.2 137 75.9
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 2.3e-54 216.9 192 59.4
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 6.6e-54 215.3 137 75.9
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 7.5e-50 201.8 130 76.2
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.9e-49 199.9 133 71.4
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.1e-48 198.0 244 41.8
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.4e-48 197.6 156 64.1
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.4e-48 196.8 164 58.5
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.6e-47 194.1 138 68.1
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 7.8e-47 191.8 110 82.7
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 5.1e-46 189.1 149 63.1
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 9.5e-45 184.9 112 77.7
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.0e-42 177.2 114 71.9
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.4e-42 176.0 239 39.3
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 5.8e-42 175.6 136 65.4
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 5.8e-42 175.6 136 65.4
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.9e-37 160.6 164 54.3
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.3e-37 159.8 232 38.4
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 3.3e-37 159.8 139 55.4
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.4e-35 153.7 92 79.3
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.5e-34 151.0 82 79.3
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.0e-34 150.6 244 37.3
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 3.8e-33 146.4 144 54.9
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 2.7e-31 140.2 80 81.2
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 1.5e-29 134.4 76 78.9
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.3e-28 131.3 76 73.7
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.1e-27 126.7 67 85.1
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.2e-25 120.6 115 59.1
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.6e-23 114.4 247 31.2
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.1e-23 114.0 71 74.6
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 2.7e-23 113.6 93 60.2
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.0e-22 110.2 56 85.7
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.3e-21 106.7 137 49.6
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 6.9e-19 99.0 70 67.1
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 4.2e-16 89.7 59 69.5
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 2.7e-15 87.0 48 79.2
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.9e-14 83.2 59 57.6
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 6.7e-14 82.4 138 37.0
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 7.6e-10 68.9 102 36.3
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 7.1e-08 62.4 45 62.2
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 6.0e-07 59.3 76 42.1


User provided reference genes

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