Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 0.0e+00 1402.5 800 100.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.4e-180 637.5 837 49.2
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 4.9e-170 602.4 689 50.2
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.8e-164 583.9 738 48.5
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 7.9e-160 568.5 704 47.0
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.4e-156 557.8 698 48.4
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 2.4e-156 557.0 722 47.1
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 5.8e-155 552.4 815 42.1
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 4.9e-154 549.3 706 47.7
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 1.6e-152 544.3 717 47.0
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.6e-152 544.3 665 48.9
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 3.5e-152 543.1 714 46.2
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 6.3e-149 532.3 782 43.9
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 2.4e-148 530.4 681 46.1
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.8e-140 504.2 816 41.5
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.4e-140 503.8 669 46.3
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.0e-139 500.7 643 46.5
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 2.5e-137 493.8 807 40.0
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 7.7e-131 472.2 704 43.0
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 2.2e-125 454.1 774 40.7
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.4e-119 434.9 668 40.0
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.3e-119 434.1 655 40.5
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.4e-118 429.9 649 41.4
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 4.8e-117 426.4 663 40.7
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.1e-116 425.2 748 41.0
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.8e-116 424.5 662 40.2
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.4e-116 424.1 663 40.6
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 7.0e-116 422.5 641 42.7
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.6e-115 421.4 797 38.5
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.9e-113 414.5 640 39.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 4.2e-113 413.3 739 39.9
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 5.5e-113 412.9 733 40.4
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 7.2e-113 412.5 712 41.6
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.1e-112 411.0 730 38.5
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.7e-110 402.9 671 40.1
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.7e-109 401.4 864 36.5
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 4.8e-109 399.8 843 36.9
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 4.8e-109 399.8 686 42.1
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.1e-108 397.1 664 40.2
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 7.0e-108 396.0 659 38.4
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 9.1e-108 395.6 768 36.1
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 4.5e-107 393.3 662 41.5
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 5.9e-107 392.9 693 39.4
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 3.8e-106 390.2 756 37.3
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.5e-105 388.3 723 40.1
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.2e-104 385.2 743 35.9
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 5.2e-103 379.8 741 39.7
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.7e-101 374.8 765 35.3
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 6.3e-101 372.9 636 39.0
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 8.3e-101 372.5 785 35.7
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.4e-100 371.7 801 34.5
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.8e-100 371.3 704 36.9
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 7.0e-100 369.4 663 40.6
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 3.5e-99 367.1 679 39.8
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.3e-98 364.4 699 38.9
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 2.9e-98 364.0 722 38.0
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.9e-98 364.0 734 34.1
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 3.9e-98 363.6 630 36.8
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 5.0e-98 363.2 673 36.8
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 6.6e-98 362.8 647 38.3
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 8.6e-98 362.5 674 38.3
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 8.6e-98 362.5 780 36.7
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.1e-97 362.1 700 39.0
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.1e-97 362.1 691 36.9
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 4.3e-97 360.1 668 37.7
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 4.7e-96 356.7 685 37.2
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.0e-95 355.5 769 36.5
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.0e-95 355.5 678 37.0
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.8e-95 354.8 681 36.7
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.1e-95 354.0 659 40.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 3.1e-95 354.0 676 40.4
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 6.8e-95 352.8 686 38.5
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 2.0e-94 351.3 641 36.8
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 2.0e-94 351.3 750 34.4
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.3e-93 348.6 674 36.2
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.9e-93 347.4 749 32.8
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 2.4e-92 344.4 630 39.0
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 5.4e-92 343.2 761 35.1
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 3.5e-91 340.5 710 34.9
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.7e-90 338.2 628 36.8
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.7e-90 338.2 827 31.9
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 3.0e-90 337.4 680 35.6
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.5e-89 335.1 751 32.2
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 2.5e-89 334.3 707 35.8
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 5.6e-89 333.2 752 33.9
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-88 332.0 685 34.9
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.6e-88 331.6 774 35.8
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 2.1e-88 331.3 685 34.7
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 2.1e-88 331.3 685 34.7
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.4e-87 328.6 556 37.6
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.4e-86 323.9 775 32.3
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 3.4e-86 323.9 654 34.4
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 4.4e-86 323.6 683 34.0
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 7.5e-86 322.8 707 35.8
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.1e-84 318.9 650 34.9
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 7.1e-84 316.2 742 33.3
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 6.0e-83 313.2 634 35.2
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.3e-82 312.0 645 35.8
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 8.6e-82 309.3 685 33.1
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.5e-81 308.5 695 34.2
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 4.3e-81 307.0 654 34.6
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 8.1e-80 302.8 628 33.4
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 8.9e-79 299.3 768 31.5
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.5e-78 298.5 648 33.5
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 4.9e-77 293.5 744 32.5
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 3.3e-73 280.8 852 29.0
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.8e-71 275.0 844 29.3
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 3.1e-71 274.2 815 29.0
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 3.9e-66 257.3 561 35.5
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.3e-65 253.1 696 31.9
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.6e-65 252.7 658 29.6
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.4e-60 238.8 697 29.7
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 7.1e-60 236.5 340 45.0
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 5.6e-57 226.9 566 33.6
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 6.9e-55 219.9 191 59.7
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 9.0e-55 219.5 463 34.6
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.0e-50 206.1 664 27.4
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 9.6e-49 199.5 313 39.0
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.6e-46 189.9 670 25.7
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 5.5e-44 183.7 173 54.3
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 7.9e-43 179.9 432 33.6
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.0e-42 179.5 257 38.9
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.2e-38 166.0 273 48.4
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.4e-38 164.5 213 41.8
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.0e-37 162.9 224 41.5
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 7.9e-35 153.3 203 40.9
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 8.2e-32 143.3 339 33.9
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 5.9e-30 137.1 136 53.7
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.3e-24 119.4 132 47.7
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 6.3e-24 117.1 204 35.8
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.4e-23 115.9 140 46.4
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.8e-23 115.5 208 35.6
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 4.8e-16 90.9 764 22.4
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 7.7e-14 83.6 365 25.2
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.3e-13 82.8 338 26.6
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 2.2e-13 82.0 190 31.1
Zm00001eb152820 Zea mays HOM05D056051 ORTHO05D049612 2.2e-08 65.5 125 37.6
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 2.8e-08 65.1 75 46.7
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 9.1e-07 60.1 91 35.2
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 2.0e-06 58.9 61 44.3
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 2.0e-06 58.9 68 41.2
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 3.5e-06 58.2 71 45.1


User provided reference genes

Program Settings