Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.1e-31 139.4 73 100.0
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 5.4e-15 84.0 73 76.7
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.2e-14 82.8 70 74.3
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.3e-13 79.3 73 74.0
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.7e-13 79.0 70 71.4
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.7e-13 79.0 78 65.4
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 2.9e-13 78.2 71 66.2
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.9e-13 78.2 66 71.2
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.9e-13 78.2 66 71.2
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 3.9e-13 77.8 70 75.7
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 8.6e-13 76.6 68 67.6
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.3e-12 74.3 72 65.3
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.6e-12 73.9 71 66.2
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 9.5e-12 73.2 68 70.6
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 9.5e-12 73.2 72 63.9
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 1.2e-11 72.8 74 63.5
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.1e-11 72.0 70 67.1
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 2.8e-11 71.6 67 65.7
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.8e-11 71.6 68 61.8
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 4.7e-11 70.9 72 63.9
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.7e-11 70.9 69 63.8
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 6.1e-11 70.5 71 64.8
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 8.0e-11 70.1 71 63.4
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.0e-10 69.7 76 60.5
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.0e-10 69.7 76 60.5
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.0e-10 69.7 69 65.2
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.0e-10 69.7 69 65.2
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 1.4e-10 69.3 73 64.4
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 1.4e-10 69.3 73 64.4
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.8e-10 68.9 74 59.5
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 1.8e-10 68.9 69 65.2
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 3.1e-10 68.2 68 63.2
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.2e-10 67.4 68 63.2
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.2e-10 67.4 66 53.0
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 6.8e-10 67.0 66 63.6
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 6.8e-10 67.0 60 68.3
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 6.8e-10 67.0 68 66.2
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 8.9e-10 66.6 74 60.8
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 8.9e-10 66.6 70 64.3
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.2e-09 66.2 67 53.7
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 1.2e-09 66.2 79 58.2
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 1.2e-09 66.2 68 66.2
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.5e-09 65.9 68 61.8
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 2.0e-09 65.5 72 65.3
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 2.0e-09 65.5 70 64.3
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 2.0e-09 65.5 71 59.2
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 2.0e-09 65.5 68 58.8
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 2.6e-09 65.1 71 57.7
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 2.6e-09 65.1 63 65.1
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.6e-09 65.1 64 65.6
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.6e-09 65.1 68 61.8
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 3.4e-09 64.7 67 61.2
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.4e-09 64.7 68 60.3
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 3.4e-09 64.7 62 67.7
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 4.4e-09 64.3 73 63.0
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 4.4e-09 64.3 68 66.2
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 4.4e-09 64.3 70 60.0
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 5.8e-09 63.9 62 66.1
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 7.5e-09 63.5 69 56.5
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 7.5e-09 63.5 73 53.4
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 7.5e-09 63.5 85 51.8
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 9.8e-09 63.2 65 56.9
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 9.8e-09 63.2 65 56.9
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 9.8e-09 63.2 65 56.9
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 9.8e-09 63.2 69 60.9
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.8e-09 63.2 57 68.4
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 9.8e-09 63.2 71 63.4
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 9.8e-09 63.2 70 60.0
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 1.3e-08 62.8 61 63.9
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.3e-08 62.8 74 58.1
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.7e-08 62.4 65 69.2
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.2e-08 62.0 65 56.9
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 2.9e-08 61.6 60 63.3
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 2.9e-08 61.6 52 69.2
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.9e-08 61.6 78 56.4
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.9e-08 61.6 73 61.6
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.9e-08 61.6 73 61.6
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 2.9e-08 61.6 56 60.7
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 2.9e-08 61.6 77 59.7
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 3.7e-08 61.2 63 55.6
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 3.7e-08 61.2 63 63.5
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 3.7e-08 61.2 68 57.4
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 4.9e-08 60.8 65 55.4
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 4.9e-08 60.8 65 55.4
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 4.9e-08 60.8 72 51.4
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 4.9e-08 60.8 50 74.0
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 4.9e-08 60.8 68 60.3
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 6.4e-08 60.5 51 72.5
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 8.3e-08 60.1 49 67.3
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 8.3e-08 60.1 75 61.3
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 8.3e-08 60.1 70 62.9
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 1.1e-07 59.7 66 63.6
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.4e-07 59.3 54 66.7
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 54 66.7
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 68 63.2
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 61 65.6
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.4e-07 59.3 66 63.6
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.4e-07 59.3 66 63.6
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 1.4e-07 59.3 49 73.5
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 1.4e-07 59.3 49 73.5
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 68 50.0
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.9e-07 58.9 61 65.6
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.9e-07 58.9 61 65.6
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 1.9e-07 58.9 66 63.6
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.9e-07 58.9 66 63.6
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.9e-07 58.9 72 56.9
Os07g0567900 Oryza sativa ssp. japonica HOM05D002385 ORTHO05D002245 1.9e-07 58.9 83 55.4
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.9e-07 58.9 65 55.4
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 1.9e-07 58.9 69 50.7
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.4e-07 58.5 63 52.4
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.4e-07 58.5 68 63.2
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 2.4e-07 58.5 66 60.6
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 2.4e-07 58.5 74 56.8
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 2.4e-07 58.5 67 62.7
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.4e-07 58.5 73 57.5
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 3.2e-07 58.2 56 66.1
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 3.2e-07 58.2 56 66.1
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 3.2e-07 58.2 54 64.8
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.2e-07 58.2 66 63.6
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 3.2e-07 58.2 73 50.7
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 4.1e-07 57.8 63 54.0
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 4.1e-07 57.8 65 52.3
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 4.1e-07 57.8 65 55.4
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 4.1e-07 57.8 68 57.4
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 4.1e-07 57.8 68 58.8
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.1e-07 57.8 55 63.6
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 5.4e-07 57.4 72 58.3
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 5.4e-07 57.4 71 54.9
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 5.4e-07 57.4 71 54.9
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 5.4e-07 57.4 66 56.1
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 5.4e-07 57.4 67 56.7
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 5.4e-07 57.4 72 58.3
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 7.0e-07 57.0 65 52.3
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 7.0e-07 57.0 65 52.3
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 7.0e-07 57.0 75 49.3
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 7.0e-07 57.0 65 53.8
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 7.0e-07 57.0 70 45.7
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 9.2e-07 56.6 67 56.7
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 9.2e-07 56.6 67 56.7
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 9.2e-07 56.6 65 52.3
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 9.2e-07 56.6 81 48.1
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 9.2e-07 56.6 67 55.2
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 9.2e-07 56.6 67 56.7
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 9.2e-07 56.6 68 61.8
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 9.2e-07 56.6 55 67.3
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 9.2e-07 56.6 70 51.4
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 9.2e-07 56.6 82 45.1
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 9.2e-07 56.6 69 58.0
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 9.2e-07 56.6 51 68.6
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 9.2e-07 56.6 71 47.9
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 1.2e-06 56.2 70 60.0
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-06 56.2 70 54.3
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 1.6e-06 55.8 55 52.7
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 1.6e-06 55.8 55 52.7
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 1.6e-06 55.8 64 59.4
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.0e-06 55.5 66 53.0
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.0e-06 55.5 54 63.0
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.0e-06 55.5 65 46.2
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 2.0e-06 55.5 73 57.5
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 2.0e-06 55.5 73 56.2
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.7e-06 55.1 71 52.1
HanXRQChr01g0017681 Helianthus annuus HOM05D002385 ORTHO05D002245 2.7e-06 55.1 51 54.9
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 3.5e-06 54.7 77 46.8
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 3.5e-06 54.7 70 51.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 3.5e-06 54.7 70 51.4
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 3.5e-06 54.7 61 62.3
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 4.6e-06 54.3 65 55.4
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 4.6e-06 54.3 66 53.0
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.6e-06 54.3 76 48.7
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 7.8e-06 53.5 66 53.0


User provided reference genes

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