Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.1e-78 296.6 156 100.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.5e-54 216.5 125 92.0
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 8.4e-50 200.7 114 92.1
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 7.1e-49 197.6 125 83.2
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.5e-46 189.9 110 87.3
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.5e-46 189.1 123 80.5
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.6e-45 186.4 135 77.0
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 1.6e-45 186.4 126 80.2
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 3.7e-45 185.3 126 77.0
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.8e-45 184.9 124 78.2
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.4e-44 182.6 126 77.8
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 3.1e-44 182.2 126 77.8
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 3.1e-44 182.2 126 77.8
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 9.0e-44 180.6 124 80.6
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.5e-43 179.9 120 78.3
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 4.5e-43 178.3 120 80.0
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 3.8e-42 175.3 120 78.3
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.9e-42 174.9 120 78.3
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 8.4e-42 174.1 122 79.5
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 4.2e-41 171.8 117 79.5
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.6e-40 169.9 117 78.6
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.6e-40 169.9 115 78.3
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.7e-40 169.1 121 76.0
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.5e-40 168.7 129 72.9
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 6.0e-40 167.9 115 78.3
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.9e-40 167.5 122 76.2
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.9e-40 167.5 122 76.2
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.8e-39 166.4 122 73.8
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.8e-39 166.4 117 77.8
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.3e-39 166.0 117 77.8
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 5.1e-39 164.9 116 75.9
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 5.1e-39 164.9 118 74.6
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 8.7e-39 164.1 116 74.1
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 1.1e-38 163.7 119 74.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.1e-38 163.7 122 73.8
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.1e-38 163.7 122 72.1
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.5e-38 163.3 116 73.3
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.9e-38 162.9 124 71.8
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 3.3e-38 162.2 116 76.7
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.3e-38 161.8 119 73.9
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 4.3e-38 161.8 119 73.9
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 4.3e-38 161.8 120 72.5
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 9.7e-38 160.6 115 73.9
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.3e-37 160.2 117 73.5
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.3e-37 160.2 117 73.5
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.3e-37 160.2 117 71.8
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.2e-37 159.5 120 70.8
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 2.2e-37 159.5 117 73.5
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 2.2e-37 159.5 117 72.6
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.8e-37 159.1 115 73.9
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.7e-37 158.7 119 73.1
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 3.7e-37 158.7 115 73.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 4.8e-37 158.3 117 73.5
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.4e-36 156.8 111 72.1
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.4e-36 156.8 116 73.3
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 3.1e-36 155.6 115 71.3
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 4.1e-36 155.2 115 72.2
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 4.1e-36 155.2 111 71.2
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 4.1e-36 155.2 120 70.0
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.3e-36 154.8 115 71.3
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 5.3e-36 154.8 122 68.9
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 5.3e-36 154.8 115 71.3
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 5.3e-36 154.8 118 71.2
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 5.3e-36 154.8 117 70.9
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 6.9e-36 154.5 125 66.4
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 6.9e-36 154.5 122 71.3
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 9.0e-36 154.1 103 76.7
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 9.0e-36 154.1 125 66.4
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 9.0e-36 154.1 96 81.2
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 9.0e-36 154.1 111 72.1
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-35 153.7 115 72.2
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-35 153.7 111 71.2
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.2e-35 153.7 120 70.8
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.2e-35 153.7 118 69.5
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.5e-35 153.3 114 71.1
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-35 153.3 121 68.6
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-35 152.9 109 72.5
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-35 152.1 121 67.8
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 3.4e-35 152.1 130 63.8
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 4.5e-35 151.8 111 70.3
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.5e-35 151.8 120 71.7
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 5.9e-35 151.4 120 68.3
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 5.9e-35 151.4 122 66.4
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.7e-35 151.0 101 75.2
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 7.7e-35 151.0 128 66.4
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 7.7e-35 151.0 120 67.5
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.0e-34 150.6 116 69.0
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 1.0e-34 150.6 100 76.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-34 150.6 100 76.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-34 150.6 100 76.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.0e-34 150.6 100 76.0
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-34 149.8 110 70.0
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.7e-34 149.8 110 70.0
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.2e-34 149.4 119 68.9
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.2e-34 149.4 111 68.5
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.8e-34 148.7 121 66.9
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 3.8e-34 148.7 102 75.5
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 3.8e-34 148.7 100 75.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.0e-34 148.3 116 69.8
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 8.5e-34 147.5 107 70.1
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.1e-33 147.1 119 67.2
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.1e-33 147.1 116 68.1
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.4e-33 146.7 101 75.2
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.9e-33 146.4 115 67.8
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 1.9e-33 146.4 115 67.8
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 2.5e-33 146.0 106 70.8
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.2e-33 145.6 116 66.4
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 4.6e-32 141.7 98 72.4
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.0e-31 140.6 123 63.4
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 3.0e-31 139.0 96 75.0
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.1e-30 137.1 123 62.6
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.5e-30 136.7 121 62.8
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.5e-30 136.7 122 59.0
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 2.0e-30 136.3 100 72.0
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 2.5e-30 136.0 112 61.6
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.7e-29 133.3 105 66.7
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 2.8e-29 132.5 128 61.7
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 2.4e-28 129.4 118 60.2
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 5.3e-28 128.3 70 90.0
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 2.0e-27 126.3 69 91.3
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 3.4e-27 125.6 101 69.3
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-27 125.2 85 74.1
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.5e-25 119.4 105 61.9
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.6e-24 116.7 86 75.6
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 6.1e-24 114.8 100 61.0
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 8.2e-21 104.4 77 68.8
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 8.2e-21 104.4 77 68.8
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-20 103.6 83 66.3
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 2.4e-20 102.8 98 55.1
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 3.1e-20 102.4 127 47.2
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 5.3e-20 101.7 80 67.5
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 7.0e-20 101.3 121 49.6
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.2e-19 100.5 56 87.5
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.0e-19 99.8 67 74.6
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.0e-18 97.4 64 73.4
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-17 94.0 69 72.5
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-14 83.2 74 63.5
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 7.4e-14 81.3 53 75.5
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.8e-13 78.6 72 62.5
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 6.3e-13 78.2 124 46.8
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 8.2e-13 77.8 85 56.5
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 5.3e-12 75.1 57 66.7
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 7.0e-12 74.7 72 59.7
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 9.1e-12 74.3 103 43.7
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 3.5e-11 72.4 90 50.0
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 2.5e-09 66.2 59 54.2
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 9.4e-09 64.3 58 63.8
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.2e-08 63.9 115 39.1
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-08 63.2 81 51.9
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 6.1e-08 61.6 77 53.2
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 8.0e-08 61.2 31 90.3
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 2.3e-07 59.7 126 34.9
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 3.0e-07 59.3 47 66.0
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.2e-06 57.4 52 61.5
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 7.5e-06 54.7 44 63.6


User provided reference genes

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