Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 7.4e-173 610.5 326 100.0
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 4.7e-95 352.1 349 57.3
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 6.9e-78 295.0 329 55.0
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.6e-74 283.9 327 55.7
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 6.6e-73 278.5 361 48.8
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 2.1e-71 273.5 361 47.6
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.4e-70 270.8 396 46.0
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 5.8e-69 265.4 380 45.8
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 9.9e-69 264.6 370 48.4
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.3e-68 264.2 381 46.2
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 3.8e-68 262.7 374 44.7
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.1e-67 261.2 385 46.8
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.4e-67 260.8 374 45.7
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.9e-67 260.4 405 45.2
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.9e-67 260.4 416 43.3
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 2.4e-67 260.0 361 48.2
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 5.4e-67 258.8 355 47.9
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 7.1e-67 258.5 386 45.3
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 9.3e-67 258.1 399 44.1
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.6e-66 257.3 395 44.1
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.1e-66 256.9 398 43.5
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.7e-66 256.5 417 43.6
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 6.0e-66 255.4 374 45.2
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.0e-65 254.6 372 45.2
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.3e-65 253.4 391 44.0
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.3e-65 253.4 398 43.2
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 3.9e-65 252.7 380 45.3
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.9e-64 250.4 370 47.0
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 3.3e-64 249.6 249 57.0
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 5.6e-64 248.8 377 45.4
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 9.6e-64 248.1 223 59.2
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.6e-63 247.3 403 43.4
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 2.1e-63 246.9 222 61.3
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 2.1e-63 246.9 398 43.2
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 2.1e-63 246.9 370 46.8
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.8e-63 246.5 353 44.8
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 3.7e-63 246.1 404 42.1
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.4e-62 244.2 378 45.0
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 3.1e-62 243.0 377 43.2
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 5.3e-62 242.3 374 43.0
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 6.9e-62 241.9 293 50.9
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 9.0e-62 241.5 372 44.4
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 9.0e-62 241.5 370 44.1
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 9.0e-62 241.5 297 49.5
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 5.8e-61 238.8 226 56.6
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 7.6e-61 238.4 372 43.0
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 9.9e-61 238.0 290 50.0
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.7e-60 237.3 383 43.1
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 2.2e-60 236.9 212 61.8
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 6.4e-60 235.3 216 58.8
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.9e-59 233.8 362 43.1
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 2.4e-59 233.4 421 40.4
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 3.2e-59 233.0 383 43.9
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 5.5e-59 232.3 369 45.5
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 5.5e-59 232.3 336 44.6
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.2e-58 231.1 418 40.0
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.1e-58 230.3 367 43.6
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 3.5e-58 229.6 379 41.4
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.6e-58 229.2 359 43.7
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 6.0e-58 228.8 360 43.1
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 6.0e-58 228.8 251 52.2
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.0e-57 228.0 416 38.9
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 1.0e-57 228.0 386 40.7
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.8e-57 227.3 425 39.8
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 2.3e-57 226.9 310 46.1
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 5.1e-57 225.7 202 58.9
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 5.1e-57 225.7 231 55.0
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 6.7e-57 225.3 360 45.0
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.5e-56 224.2 424 39.9
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.5e-56 223.4 357 46.5
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.1e-55 220.3 404 37.6
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 4.8e-55 219.2 269 48.3
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 4.0e-54 216.1 424 38.9
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 9.0e-54 214.9 166 66.9
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 4.5e-53 212.6 305 47.5
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.3e-52 211.1 390 39.0
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.3e-52 211.1 411 37.5
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 4.9e-52 209.1 405 37.3
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 5.5e-51 205.7 400 36.5
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-50 204.5 256 47.7
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 1.2e-50 204.5 275 45.5
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 3.0e-49 199.9 212 51.9
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 5.1e-49 199.1 288 42.4
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 5.1e-49 199.1 288 42.4
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 6.7e-49 198.7 405 36.0
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 2.2e-47 193.7 139 68.3
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.1e-46 189.9 429 36.1
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 4.1e-46 189.5 218 50.0
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 3.4e-45 186.4 359 39.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 5.9e-45 185.7 375 39.2
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 1.9e-43 180.6 206 56.3
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 5.5e-43 179.1 380 38.7
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.2e-42 177.9 159 59.1
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 6.1e-42 175.6 422 33.4
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.4e-41 174.5 359 37.9
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 3.9e-41 172.9 276 44.9
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 3.9e-41 172.9 202 49.0
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 1.1e-40 171.4 360 35.3
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 2.5e-40 170.2 131 64.1
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 5.7e-40 169.1 156 56.4
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 3.7e-39 166.4 358 34.6
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 4.5e-37 159.5 354 35.6
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 5.9e-37 159.1 354 35.9
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 7.7e-37 158.7 353 35.7
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 1.1e-35 154.8 208 47.6
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.0e-33 146.7 246 42.3
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 2.0e-32 144.1 263 36.9
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.8e-31 140.2 151 47.7
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 8.2e-31 138.7 324 38.9
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 8.2e-31 138.7 139 56.8
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.4e-30 137.1 297 35.7
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 7.7e-29 132.1 223 39.5
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.0e-28 131.7 327 35.5
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.4e-27 127.9 140 52.9
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 4.2e-27 126.3 132 47.7
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 2.1e-26 124.0 306 31.7
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 3.3e-24 116.7 127 46.5
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.4e-22 111.3 326 32.5
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 3.5e-21 106.7 283 30.4
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.5e-21 106.3 82 69.5
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 1.1e-19 101.7 90 55.6
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.5e-19 101.3 76 64.5
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.9e-19 100.9 185 36.2
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.6e-16 90.5 242 34.3
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 9.7e-16 88.6 278 30.9
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 2.8e-15 87.0 63 66.7
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 8.2e-15 85.5 162 38.3
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.1e-14 83.6 116 43.1
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.0e-12 78.6 106 40.6
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 2.2e-12 77.4 255 31.8
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 3.8e-12 76.6 201 30.8
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 8.5e-12 75.5 278 29.1
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 2.7e-10 70.5 45 66.7
BraA08t35622Z Brassica rapa HOM05D005116 ORTHO05D005937 8.0e-10 68.9 313 29.4
A08p37240 Brassica napus HOM05D005116 ORTHO05D005937 2.0e-08 64.3 309 30.1
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 2.6e-08 63.9 58 56.9
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 7.5e-08 62.4 86 38.4
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 2.2e-07 60.8 52 57.7
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 2.8e-07 60.5 84 38.1
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 6.3e-07 59.3 84 36.9
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 1.4e-06 58.2 86 43.0
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 2.4e-06 57.4 84 35.7
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 9.1e-06 55.5 56 53.6


User provided reference genes

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