Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1761.9 921 100.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1498.4 921 83.7
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1496.1 923 83.2
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1369.0 989 74.8
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1242.6 922 69.3
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1235.7 911 70.4
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1225.3 908 69.4
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1221.8 920 69.7
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1219.9 921 70.4
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1217.2 924 68.7
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1214.1 915 70.3
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1207.6 920 68.9
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1203.7 924 67.0
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1199.9 921 67.5
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1199.1 918 68.1
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1196.4 958 65.6
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1191.4 916 69.2
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1189.5 915 66.7
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1186.0 916 69.1
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1184.1 726 84.0
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1182.9 920 65.9
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1181.4 849 71.1
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1180.2 916 68.7
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1176.8 921 65.5
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1175.2 997 62.7
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1164.1 915 68.3
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1160.6 920 65.3
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1157.5 921 67.5
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1157.1 874 68.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1156.7 925 64.4
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1154.8 930 67.2
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1142.9 934 63.7
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1142.1 904 65.8
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1140.9 920 64.3
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1139.8 961 63.9
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1136.3 925 66.2
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1134.0 927 66.2
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1133.6 922 66.5
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1123.2 925 64.3
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 0.0e+00 1121.3 1146 56.1
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1120.9 934 63.2
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1116.7 907 63.6
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1115.9 922 63.7
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1114.4 928 63.5
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1114.0 939 62.8
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1113.6 902 64.2
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1112.1 922 64.9
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1110.9 907 63.1
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1106.7 912 63.8
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1100.1 940 64.7
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1098.2 857 65.0
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1097.4 928 63.3
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 0.0e+00 1093.2 955 62.4
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1092.4 910 63.7
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1090.5 1079 56.5
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1085.5 872 64.2
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1084.7 914 62.9
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1083.9 914 62.8
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1081.2 907 62.8
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1080.5 908 62.9
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1078.2 910 62.9
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1077.8 914 62.5
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1075.5 912 62.9
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 6.3e-312 1074.7 871 65.4
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 6.3e-312 1074.3 1084 54.7
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 1.3e-311 1073.2 907 63.0
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 2.1e-310 1068.9 911 62.9
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 5.3e-309 1064.3 913 61.4
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 1.2e-308 1063.1 928 61.9
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 1.7e-307 1059.3 910 61.6
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 6.0e-305 1050.8 911 62.7
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 3.1e-301 1038.5 908 60.6
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 4.0e-301 1038.1 908 61.5
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 4.2e-298 1028.1 911 61.6
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 5.5e-298 1027.7 926 60.2
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 5.5e-298 1027.7 912 61.5
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 5.1e-296 1021.1 920 59.2
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 6.9e-293 1010.7 917 57.7
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 4.1e-285 984.9 908 58.5
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 8.5e-283 977.2 925 57.4
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 3.2e-282 975.3 760 66.8
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.6e-279 965.7 929 57.3
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 7.4e-279 964.1 759 64.8
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 8.2e-278 960.7 874 57.6
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.1e-273 946.0 912 54.7
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 1.8e-272 943.0 1014 52.9
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.7e-267 926.4 719 68.2
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 3.6e-265 918.7 888 57.0
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 6.1e-265 917.9 766 62.9
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.0e-256 890.6 921 52.7
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.3e-254 883.6 635 73.7
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 2.4e-253 879.4 728 66.5
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 6.8e-248 861.3 918 50.9
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 5.4e-229 798.5 641 63.7
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.1e-210 737.6 599 63.4
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 7.3e-202 708.4 563 67.9
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 7.9e-196 688.3 528 69.3
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 5.3e-184 649.0 569 59.9
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.0e-167 594.0 552 61.2
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.0e-167 594.0 904 41.0
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 1.1e-160 571.6 908 42.7
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.1e-160 571.6 430 67.9
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 3.1e-160 570.1 434 71.7
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.3e-158 564.7 487 62.4
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.4e-152 544.7 911 37.5
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 7.7e-143 512.3 470 59.4
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 3.2e-141 506.9 411 63.3
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 3.4e-138 496.9 894 36.2
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 9.8e-130 468.8 612 45.1
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 4.9e-129 466.5 914 35.6
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 8.9e-115 419.1 294 74.1
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.7e-113 414.8 633 40.9
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 6.2e-100 369.8 670 38.4
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-92 343.6 575 38.1
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 2.0e-90 338.2 254 71.7
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 7.8e-87 326.2 349 51.3
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 4.3e-85 320.5 228 72.4
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.8e-84 317.8 266 60.5
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 9.9e-74 282.7 616 35.7
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.8e-70 271.9 219 73.1
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 4.3e-69 267.3 284 53.9
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.8e-59 235.3 151 72.8
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 6.1e-47 193.7 115 82.6
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 7.4e-45 186.8 153 62.1
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 1.5e-42 179.1 259 41.3
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 9.1e-35 153.3 103 70.9
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 3.6e-31 141.4 219 37.4
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 4.4e-29 134.4 126 52.4
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.4e-27 129.4 163 42.3
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.5e-24 119.4 166 47.0
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.1e-23 114.0 87 63.2
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.0e-22 111.3 120 49.2
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 2.8e-20 105.1 100 63.0
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 4.5e-18 97.8 84 66.7
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 7.7e-18 97.1 158 41.1
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.7e-17 95.9 105 52.4
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.5e-16 92.8 133 44.4
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 2.3e-14 85.5 58 65.5
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 4.9e-12 77.8 130 42.3
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 1.1e-11 76.6 988 19.6
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 9.2e-11 73.6 66 63.6
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 1.6e-10 72.8 130 40.0
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 1.0e-09 70.1 505 21.4
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 1.3e-09 69.7 146 35.6
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 1.9e-08 65.9 195 30.3
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 7.3e-08 63.9 112 38.4
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.4e-06 59.7 83 47.0
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 2.3e-06 58.9 239 28.9


User provided reference genes

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