Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 5.9e-62 240.7 125 100.0
SalBow7G3719 Salvia bowleyana HOM05D004793 ORTHO05D004423 1.1e-18 97.1 126 53.2
MSTRG.6642 Avicennia marina HOM05D004793 ORTHO05D004423 4.4e-17 91.7 127 56.7
SGA_v2.0_scaffold73G24508 Striga asiatica HOM05D004793 ORTHO05D004423 7.0e-15 84.3 135 47.4
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 3.0e-13 79.0 127 49.6
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 3.0e-13 79.0 127 49.6
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 1.5e-12 76.6 142 40.1
MSTRG.14923 Avicennia marina HOM05D004793 ORTHO05D004423 7.3e-12 74.3 137 42.3
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 8.1e-11 70.9 131 43.5
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 8.1e-11 70.9 127 40.9
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.8e-10 69.7 131 42.7
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 1.8e-10 69.7 113 43.4
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.8e-10 67.8 141 36.2
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 7.5e-09 64.3 134 40.3
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 7.5e-09 64.3 131 40.5
Thhalv10026565m.g Eutrema salsugineum HOM05D010379 ORTHO05D012419 9.9e-09 63.9 129 37.2
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 1.3e-08 63.5 60 60.0
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 1.3e-08 63.5 134 39.6
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 2.2e-08 62.8 125 37.6
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 2.9e-08 62.4 138 36.2
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 2.9e-08 62.4 136 39.0
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 3.7e-08 62.0 129 38.0
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 4.9e-08 61.6 129 37.2
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 4.9e-08 61.6 128 40.6
CARHR222830 Cardamine hirsuta HOM05D010379 ORTHO05D012419 1.1e-07 60.5 129 36.4
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.1e-07 60.5 127 35.4
Carub.0007s2506 Capsella rubella HOM05D010379 ORTHO05D012419 1.4e-07 60.1 127 36.2
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.4e-07 60.1 60 55.0
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.4e-07 60.1 45 66.7
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 2.4e-07 59.3 133 36.1
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.4e-07 59.3 128 39.1
Sp7g15000 Schrenkiella parvula HOM05D010379 ORTHO05D012419 2.4e-07 59.3 128 36.7
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.2e-07 58.9 130 39.2
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.2e-07 58.9 130 39.2
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 3.2e-07 58.9 133 36.1
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 3.2e-07 58.9 135 36.3
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 3.2e-07 58.9 135 33.3
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 3.2e-07 58.9 44 70.5
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.1e-07 58.5 130 36.9
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 4.1e-07 58.5 131 36.6
Gorai.001G099200 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.1e-07 58.5 126 38.9
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 5.4e-07 58.2 127 35.4
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 5.4e-07 58.2 139 36.7
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 5.4e-07 58.2 49 61.2
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 7.1e-07 57.8 132 34.1
BcaC09g50349 Brassica carinata HOM05D010379 ORTHO05D012419 7.1e-07 57.8 129 35.7
BolC1t02584H Brassica oleracea HOM05D010379 ORTHO05D012419 7.1e-07 57.8 129 35.7
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 7.1e-07 57.8 142 40.8
Gohir.A07G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.1e-07 57.8 126 38.9
Gohir.D07G092600 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.1e-07 57.8 126 38.9
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 7.1e-07 57.8 127 37.8
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 9.2e-07 57.4 132 39.4
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 9.2e-07 57.4 125 36.0
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 9.2e-07 57.4 125 36.0
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 9.2e-07 57.4 84 44.0
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 1.2e-06 57.0 127 40.9
AL7G38540 Arabidopsis lyrata HOM05D010379 ORTHO05D012419 1.6e-06 56.6 127 34.6
C01p26370 Brassica napus HOM05D010379 ORTHO05D012419 1.6e-06 56.6 129 34.9
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 1.6e-06 56.6 145 37.2
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.6e-06 56.6 131 38.2
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.6e-06 56.6 131 38.2
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 1.6e-06 56.6 45 64.4
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 1.6e-06 56.6 140 36.4
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.1e-06 56.2 74 45.9
A01p21100 Brassica napus HOM05D010379 ORTHO05D012419 2.7e-06 55.8 128 35.9
BraA01t02021Z Brassica rapa HOM05D010379 ORTHO05D012419 2.7e-06 55.8 128 35.9
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 3.5e-06 55.5 131 39.7
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 4.6e-06 55.1 70 47.1
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 6.0e-06 54.7 46 65.2
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 6.0e-06 54.7 133 35.3
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 6.0e-06 54.7 128 37.5
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.0e-06 54.7 48 62.5
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 6.0e-06 54.7 48 62.5
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.0e-06 54.7 43 62.8
MELO3C024110.2 Cucumis melo HOM05D004793 ORTHO05D004423 7.8e-06 54.3 135 36.3
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.8e-06 54.3 130 36.9
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 7.8e-06 54.3 56 50.0
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 7.8e-06 54.3 130 34.6


User provided reference genes

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