Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 3.5e-70 268.1 128 100.0
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 3.8e-64 248.1 128 91.4
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 8.4e-64 246.9 128 93.0
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.4e-63 246.1 127 90.6
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.9e-63 245.7 124 92.7
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 2.4e-63 245.4 124 93.5
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 3.2e-63 245.0 122 94.3
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 3.2e-63 245.0 128 92.2
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 4.2e-63 244.6 128 91.4
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 7.1e-63 243.8 124 92.7
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 7.1e-63 243.8 128 91.4
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.1e-63 243.8 127 89.8
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 7.1e-63 243.8 128 91.4
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.3e-63 243.4 128 90.6
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 9.3e-63 243.4 128 92.2
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 1.2e-62 243.0 124 91.9
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 1.2e-62 243.0 128 88.3
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 1.2e-62 243.0 124 91.9
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.6e-62 242.7 127 89.8
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 1.6e-62 242.7 128 91.4
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 1.6e-62 242.7 124 91.9
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 2.1e-62 242.3 128 90.6
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.1e-62 242.3 128 90.6
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.1e-62 242.3 128 90.6
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.1e-62 242.3 128 90.6
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 2.1e-62 242.3 128 90.6
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 2.1e-62 242.3 128 90.6
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 2.1e-62 242.3 128 90.6
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.1e-62 242.3 128 91.4
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.1e-62 242.3 125 90.4
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 2.7e-62 241.9 124 91.9
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.7e-62 241.9 128 91.4
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 3.5e-62 241.5 128 90.6
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 3.5e-62 241.5 124 91.1
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 3.5e-62 241.5 128 89.8
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 4.6e-62 241.1 128 89.1
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 4.6e-62 241.1 120 94.2
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.6e-62 241.1 124 91.1
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.6e-62 241.1 124 91.1
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 4.6e-62 241.1 124 91.1
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 4.6e-62 241.1 124 91.9
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 6.0e-62 240.7 120 94.2
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.0e-62 240.7 128 89.8
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.0e-62 240.7 128 89.8
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 6.0e-62 240.7 128 90.6
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 6.0e-62 240.7 128 89.8
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 7.9e-62 240.4 128 90.6
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.0e-61 240.0 128 89.8
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 91.3
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 91.3
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 1.0e-61 240.0 128 89.1
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 90.3
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 90.3
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.3e-61 239.6 122 91.0
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.8e-61 239.2 128 89.8
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.3e-61 238.8 124 89.5
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.0e-61 238.4 124 91.1
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.9e-61 238.0 128 88.3
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.9e-61 238.0 128 88.3
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 3.9e-61 238.0 128 88.3
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 3.9e-61 238.0 124 88.7
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 5.1e-61 237.7 124 90.3
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 5.1e-61 237.7 124 90.3
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 5.1e-61 237.7 128 85.9
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 5.1e-61 237.7 124 90.3
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 5.1e-61 237.7 128 88.3
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 5.1e-61 237.7 128 88.3
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 6.7e-61 237.3 126 87.3
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 6.7e-61 237.3 124 89.5
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.7e-61 237.3 124 91.1
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 6.7e-61 237.3 125 88.0
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 8.7e-61 236.9 124 89.5
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.1e-60 236.5 120 92.5
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-60 236.5 120 92.5
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-60 236.5 120 92.5
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 2.5e-60 235.3 122 89.3
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 89.5
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 2.5e-60 235.3 128 88.3
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.3e-60 235.0 120 91.7
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 4.3e-60 234.6 120 90.8
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 5.6e-60 234.2 122 87.7
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 7.4e-60 233.8 126 87.3
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 7.4e-60 233.8 126 87.3
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 7.4e-60 233.8 124 87.9
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 7.4e-60 233.8 124 88.7
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 7.4e-60 233.8 120 92.5
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 7.4e-60 233.8 124 85.5
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.3e-59 233.0 126 87.3
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 1.6e-59 232.6 124 87.9
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 1.6e-59 232.6 124 87.9
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 6.2e-59 230.7 128 84.4
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 8.1e-59 230.3 128 83.6
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 2.4e-58 228.8 124 86.3
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 2.4e-58 228.8 124 86.3
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 4.0e-58 228.0 124 84.7
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 4.0e-58 228.0 126 87.3
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 4.0e-58 228.0 126 87.3
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 4.0e-58 228.0 126 87.3
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.2e-57 226.5 126 85.7
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 1.2e-57 226.5 124 83.1
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 1.5e-57 226.1 125 85.6
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 2.0e-57 225.7 125 85.6
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 2.0e-57 225.7 125 85.6
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 2.0e-57 225.7 120 85.8
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.6e-57 225.3 125 84.8
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 2.6e-57 225.3 134 82.1
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 3.4e-57 224.9 118 89.8
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 3.4e-57 224.9 118 89.8
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 4.5e-57 224.6 118 89.8
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 5.8e-57 224.2 118 89.8
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 7.6e-57 223.8 153 74.5
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 7.6e-57 223.8 118 89.8
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 7.6e-57 223.8 118 89.8
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 7.6e-57 223.8 118 89.8
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 7.6e-57 223.8 118 89.8
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 7.6e-57 223.8 118 89.8
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.0e-56 223.4 118 89.0
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-56 223.0 118 89.0
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 8.4e-56 220.3 128 82.8
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.1e-55 219.9 151 74.2
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.2e-55 218.4 124 81.5
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 3.2e-55 218.4 120 84.2
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 4.2e-55 218.0 114 89.5
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 5.5e-55 217.6 138 77.5
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 9.3e-55 216.9 122 84.4
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 9.3e-55 216.9 169 65.7
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.1e-54 215.7 124 79.8
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 8.7e-53 210.3 114 86.8
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 3.3e-52 208.4 112 88.4
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 5.7e-52 207.6 122 75.4
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 7.4e-52 207.2 121 76.9
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 1.3e-51 206.5 114 85.1
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.6e-51 206.1 109 87.2
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 4.1e-50 201.4 108 88.9
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-47 193.4 153 66.0
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.2e-43 177.2 100 86.0
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 3.4e-41 171.8 109 76.1
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 1.0e-40 170.2 126 71.4
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 6.5e-40 167.5 85 90.6
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.9e-39 166.0 84 92.9
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 3.2e-39 165.2 84 92.9
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 4.2e-39 164.9 84 92.9
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 5.5e-39 164.5 83 90.4
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.6e-38 162.9 80 93.8
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 2.7e-38 162.2 84 91.7
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 2.3e-37 159.1 128 65.6
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 5.1e-37 157.9 78 96.2
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 6.7e-37 157.5 80 88.8
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.1e-36 156.8 76 93.4
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 9.7e-36 153.7 122 65.6
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 3.1e-34 148.7 112 68.8
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 6.9e-34 147.5 78 89.7
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.5e-33 146.4 172 49.4
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 3.8e-32 141.7 78 85.9
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 8.5e-32 140.6 129 57.4
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 3.2e-31 138.7 126 57.1
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 6.1e-30 134.4 64 96.9
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 8.8e-29 130.6 73 82.2
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 3.3e-28 128.6 75 81.3
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 1.5e-23 113.2 56 92.9
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 9.4e-23 110.5 117 53.0
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 9.4e-23 110.5 117 53.0
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 1.2e-22 110.2 60 86.7
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 2.6e-20 102.4 57 84.2
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.7e-14 82.4 44 88.6


User provided reference genes

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