Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 0.0e+00 1198.7 684 100.0
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 3.9e-293 1011.1 691 81.3
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 9.7e-292 1006.5 685 80.9
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 6.5e-288 993.8 680 77.8
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 7.4e-284 980.3 676 79.9
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.8e-283 977.6 683 78.5
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.6e-281 971.8 683 77.6
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.0e-280 969.9 683 78.2
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 7.4e-276 953.7 675 78.4
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.7e-275 952.6 676 78.4
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.4e-274 948.7 682 75.4
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.1e-274 948.3 677 76.4
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 7.0e-274 947.2 678 77.7
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.1e-274 946.8 676 78.1
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.2e-273 946.4 677 76.8
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.6e-273 946.0 748 70.5
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.0e-273 945.7 652 78.4
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.5e-273 944.5 676 77.5
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.3e-272 943.0 676 78.1
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.2e-272 942.2 676 76.2
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.2e-272 942.2 748 70.3
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.9e-272 941.8 683 76.1
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 8.5e-272 940.3 678 77.0
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 8.5e-272 940.3 667 78.4
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.9e-271 939.1 679 76.9
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 2.5e-271 938.7 686 74.5
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 3.2e-271 938.3 655 78.6
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 2.7e-270 935.3 682 76.1
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.6e-270 934.9 675 75.7
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 4.7e-270 934.5 682 76.0
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.4e-269 932.9 678 77.1
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.4e-269 932.9 683 75.3
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 5.2e-269 931.0 678 74.3
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 4.4e-268 927.9 675 73.9
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 1.3e-267 926.4 684 75.3
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 2.8e-267 925.2 664 74.8
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 2.8e-267 925.2 680 74.4
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 3.7e-267 924.9 684 75.0
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.1e-266 923.3 676 75.1
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.8e-266 922.5 687 73.1
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 5.3e-266 921.0 689 73.9
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 1.2e-265 919.8 680 73.2
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 2.7e-265 918.7 684 75.9
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 4.5e-265 917.9 687 73.2
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 7.7e-265 917.1 683 74.5
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.0e-264 916.8 683 72.9
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 1.0e-264 916.8 682 74.6
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.9e-264 915.2 682 75.4
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 6.5e-264 914.1 684 73.7
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 4.2e-263 911.4 683 77.7
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 5.5e-263 911.0 682 74.0
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.7e-262 908.7 685 73.0
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 4.7e-262 907.9 687 72.3
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 4.7e-262 907.9 665 74.1
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 6.1e-262 907.5 665 74.4
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 1.0e-261 906.7 676 74.0
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.4e-261 906.4 652 76.4
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 4.0e-261 904.8 678 74.5
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 8.8e-261 903.7 682 73.8
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 3.4e-260 901.7 668 75.1
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.4e-260 901.7 682 73.5
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 4.4e-260 901.4 687 72.2
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 9.8e-260 900.2 682 73.0
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.2e-259 899.0 682 73.0
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 1.8e-258 896.0 682 72.4
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.8e-258 896.0 679 72.9
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.1e-258 895.2 682 74.5
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 4.1e-258 894.8 683 73.2
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 5.4e-258 894.4 725 69.4
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 7.0e-258 894.0 687 72.8
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 7.0e-258 894.0 690 71.6
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 9.1e-258 893.6 687 72.8
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 1.6e-257 892.9 686 71.7
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.0e-257 892.5 666 73.0
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 3.5e-257 891.7 688 71.4
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 3.8e-256 888.3 733 68.5
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 3.8e-256 888.3 656 74.2
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.5e-255 886.3 669 74.1
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.1e-254 882.5 682 71.8
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 8.0e-254 880.6 682 71.7
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 5.2e-253 877.9 686 72.0
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 2.0e-252 875.9 678 71.8
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 2.6e-252 875.5 679 71.7
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 6.3e-251 870.9 685 71.5
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.2e-250 868.6 731 68.1
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.6e-249 866.3 681 70.9
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 1.7e-248 862.8 686 71.4
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 1.7e-248 862.8 686 71.4
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 3.9e-248 861.7 683 71.2
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.9e-247 859.4 724 67.7
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 4.7e-246 854.7 660 72.0
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.0e-244 849.4 636 76.6
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.3e-243 844.0 720 66.8
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.6e-241 839.7 678 70.9
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.0e-240 837.0 664 72.0
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.3e-240 836.6 676 71.7
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 2.5e-239 832.4 686 69.0
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.8e-237 826.2 710 66.6
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 3.1e-237 825.5 676 68.6
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 4.0e-237 825.1 676 68.6
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 4.4e-236 821.6 667 71.4
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 3.5e-233 812.0 683 66.8
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 2.3e-232 809.3 682 68.9
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 3.3e-231 805.4 575 77.9
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 7.3e-231 804.3 688 68.8
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 7.3e-231 804.3 1033 50.2
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 6.2e-230 801.2 617 73.6
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 4.0e-229 798.5 731 64.0
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 2.7e-225 785.8 651 67.7
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.0e-224 783.9 652 69.0
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.6e-222 776.5 685 65.3
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.8e-221 773.1 665 66.3
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 3.4e-220 768.8 703 67.9
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 3.8e-203 712.2 665 60.9
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.1e-198 696.4 660 59.2
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.3e-192 676.4 668 58.2
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 2.3e-192 676.4 553 70.2
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.3e-190 670.6 652 59.7
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 7.5e-159 565.1 680 52.2
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.7e-155 553.9 418 76.8
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.0e-147 528.1 364 77.5
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 5.0e-139 499.2 401 72.1
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.1e-133 479.6 359 69.9
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 5.4e-125 452.6 583 50.9
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 7.6e-103 379.0 366 61.2
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.3e-82 310.5 709 34.8
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 6.9e-80 302.8 501 43.5
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 2.1e-76 291.2 505 43.0
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.1e-67 260.0 275 57.8
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 2.8e-49 201.1 121 86.8
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 9.1e-48 196.1 185 61.1
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 7.7e-47 193.0 281 47.3
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 6.5e-46 189.9 561 32.1
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 3.3e-42 177.6 121 76.0
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.8e-40 171.8 152 65.8
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.5e-38 162.9 94 87.2
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.8e-27 128.6 604 25.0
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.1e-24 117.9 688 24.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.8e-20 104.8 71 80.3
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 8.0e-20 103.2 93 62.4
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.2e-17 95.1 738 22.2
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.5e-13 81.6 66 66.7
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 8.9e-11 73.2 46 73.9
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 1.6e-07 62.4 52 65.4


User provided reference genes

Program Settings