Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 1.1e-144 516.5 250 100.0
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 2.3e-113 412.5 260 78.5
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 1.7e-108 396.4 243 79.0
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 4.1e-107 391.7 246 75.2
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 2.5e-104 382.5 245 75.5
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 7.3e-104 380.9 248 72.2
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 9.5e-104 380.6 248 74.6
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 2.8e-103 379.0 242 74.4
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 6.2e-103 377.9 240 75.0
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 8.1e-103 377.5 239 73.6
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 1.1e-102 377.1 239 73.6
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 1.8e-102 376.3 250 75.2
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 3.1e-102 375.6 244 74.6
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 6.8e-102 374.4 239 73.6
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 1.2e-101 373.6 239 73.2
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 1.5e-101 373.2 241 75.1
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 2.0e-101 372.9 240 74.2
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 1.3e-100 370.2 245 73.5
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 1.3e-100 370.2 243 73.7
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 2.2e-100 369.4 244 74.6
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 3.7e-100 368.6 246 72.4
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 1.1e-99 367.1 256 71.5
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 1.9e-99 366.3 248 71.0
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 3.2e-99 365.5 245 73.1
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 3.2e-99 365.5 244 74.2
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 5.4e-99 364.8 244 73.4
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 7.1e-99 364.4 244 74.2
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 1.2e-98 363.6 253 71.9
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 3.5e-98 362.1 242 74.0
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 4.6e-98 361.7 247 71.7
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 6.0e-98 361.3 244 70.9
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 6.0e-98 361.3 243 72.4
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 1.3e-97 360.1 243 70.8
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 3.0e-97 359.0 280 65.4
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 1.5e-96 356.7 248 70.2
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 1.9e-96 356.3 246 72.0
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 2.5e-96 355.9 242 71.1
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 3.3e-96 355.5 242 72.7
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 4.3e-96 355.1 245 71.4
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 4.3e-96 355.1 227 74.4
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 2.1e-95 352.8 240 70.8
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 2.1e-95 352.8 247 72.5
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 3.6e-95 352.1 245 70.6
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 4.7e-95 351.7 242 71.9
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 6.2e-95 351.3 242 71.5
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 6.2e-95 351.3 239 70.3
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 8.1e-95 350.9 248 70.6
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 1.1e-94 350.5 242 69.8
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 1.4e-94 350.1 245 70.2
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 1.4e-94 350.1 240 70.8
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 2.3e-94 349.4 246 71.1
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 3.1e-94 349.0 242 71.1
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 3.1e-94 349.0 247 68.4
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 3.1e-94 349.0 244 71.3
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 4.0e-94 348.6 244 69.3
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 6.8e-94 347.8 249 69.5
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 1.2e-93 347.1 245 70.6
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 1.2e-93 347.1 245 71.0
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 1.5e-93 346.7 247 70.0
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 2.0e-93 346.3 242 69.4
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 2.6e-93 345.9 242 70.7
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 2.6e-93 345.9 246 68.3
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 2.6e-93 345.9 253 69.2
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 4.4e-93 345.1 232 72.0
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 4.9e-92 341.7 245 68.2
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 1.2e-90 337.0 241 68.0
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 1.6e-90 336.7 250 65.2
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 3.5e-90 335.5 309 57.6
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 3.3e-88 328.9 249 67.1
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 7.3e-88 327.8 244 65.6
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.1e-86 322.4 259 61.0
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 3.1e-86 322.4 246 64.6
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 6.9e-86 321.2 249 65.1
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 4.4e-85 318.5 241 66.0
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 1.9e-83 313.2 188 81.9
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 4.2e-83 312.0 246 65.0
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 9.3e-83 310.8 204 75.0
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 9.3e-83 310.8 185 80.0
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 8.7e-81 304.3 240 61.7
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 8.7e-81 304.3 266 59.0
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 2.1e-79 299.7 298 52.3
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 2.2e-76 289.7 183 77.0
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 2.2e-76 289.7 249 59.4
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 2.2e-76 289.7 250 56.4
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 4.2e-75 285.4 282 52.1
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 3.5e-74 282.3 175 76.0
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 6.7e-73 278.1 256 59.8
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 9.6e-72 274.2 268 56.0
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 1.3e-71 273.9 270 55.9
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 3.6e-71 272.3 183 72.7
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 4.8e-71 271.9 247 57.1
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 8.1e-71 271.2 251 58.6
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 2.9e-68 262.7 211 60.7
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 3.3e-64 249.2 212 59.4
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 1.6e-63 246.9 285 47.7
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 2.6e-61 239.6 295 48.1
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 1.3e-55 220.7 250 48.8
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 4.8e-55 218.8 134 76.1
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 2.1e-50 203.4 209 52.6
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 1.3e-49 200.7 136 69.9
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 5.7e-40 168.7 118 69.5
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 3.3e-32 142.9 85 80.0
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 9.1e-30 134.8 93 73.1
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 7.2e-19 98.6 90 56.7
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 8.0e-10 68.6 168 28.0
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 1.4e-09 67.8 173 28.3
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 1.4e-09 67.8 174 28.7
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 4.0e-09 66.2 37 70.3
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 1.2e-08 64.7 175 26.9
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 2.6e-08 63.5 119 28.6
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 7.5e-08 62.0 185 25.9
vmacro17831 Vaccinium macrocarpon HOM05D005677 ORTHO05D006966 9.8e-08 61.6 238 26.5
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 1.7e-07 60.8 241 27.0
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 2.2e-07 60.5 190 23.7
Actinidia19186 Actinidia chinensis HOM05D005677 ORTHO05D006966 2.8e-07 60.1 243 28.4
Zm00001eb324730 Zea mays HOM05D005677 ORTHO05D006966 2.8e-07 60.1 166 30.7
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 3.7e-07 59.7 197 26.9
QL06p046093 Quercus lobata HOM05D005677 ORTHO05D006966 4.9e-07 59.3 203 26.1
Haze_15089 Corylus avellana HOM05D005677 ORTHO05D006966 6.3e-07 58.9 203 28.6
Hma1.2p1_0224F.1_g094650 Hydrangea macrophylla HOM05D005677 ORTHO05D006966 6.3e-07 58.9 201 25.9
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 1.1e-06 58.2 197 27.9
Oeu041446.1 Olea europaea HOM05D005677 ORTHO05D006966 1.1e-06 58.2 216 27.8
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 1.4e-06 57.8 118 27.1
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 1.4e-06 57.8 124 29.0
Prupe.7G154600 Prunus persica HOM05D005677 ORTHO05D006966 1.8e-06 57.4 205 25.9
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 1.8e-06 57.4 129 31.8
AUR62007566 Chenopodium quinoa HOM05D005677 ORTHO05D006966 2.4e-06 57.0 157 29.9
MELO3C007826.2 Cucumis melo HOM05D005677 ORTHO05D006966 2.4e-06 57.0 181 29.3
Cc06_g21220 Coffea canephora HOM05D005677 ORTHO05D006966 3.1e-06 56.6 212 26.4
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 4.1e-06 56.2 265 25.7
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 4.1e-06 56.2 197 27.4
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 5.4e-06 55.8 197 27.9
Gohir.A11G184300 Gossypium hirsutum HOM05D005677 ORTHO05D006966 5.4e-06 55.8 257 24.5
Nitab4.5_0001385g0030 Nicotiana tabacum HOM05D005677 ORTHO05D006966 5.4e-06 55.8 168 28.6
Sed0020674 Sechium edule HOM05D005677 ORTHO05D006966 5.4e-06 55.8 242 27.3
CsaV3_6G046230 Cucumis sativus L. HOM05D005677 ORTHO05D006966 7.0e-06 55.5 171 28.7
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 7.0e-06 55.5 140 26.4
EL10Ac6g15562 Beta vulgaris HOM05D005677 ORTHO05D006966 9.2e-06 55.1 147 29.3
CAN.G358.85 Capsicum annuum HOM05D005677 ORTHO05D006966 9.2e-06 55.1 158 27.8


User provided reference genes

Program Settings