Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 5.5e-46 187.2 89 100.0
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 3.5e-40 167.9 89 91.0
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 2.5e-38 161.8 80 93.8
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 4.2e-38 161.0 89 85.4
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 2.3e-36 155.2 80 87.5
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 8.8e-36 153.3 89 80.9
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 7.4e-35 150.2 89 79.8
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 2.8e-34 148.3 89 80.9
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 3.7e-34 147.9 79 83.5
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 6.3e-34 147.1 89 74.2
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 6.3e-34 147.1 89 74.2
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 1.8e-33 145.6 89 76.4
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 2.4e-33 145.2 78 85.9
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 3.1e-33 144.8 82 78.0
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 3.1e-33 144.8 82 78.0
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.1e-33 144.8 78 83.3
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 4.1e-33 144.4 78 83.3
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 4.1e-33 144.4 98 74.5
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 5.3e-33 144.1 89 75.3
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 7.0e-33 143.7 80 77.5
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 9.1e-33 143.3 89 75.3
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 9.1e-33 143.3 84 75.0
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.2e-32 142.9 80 78.8
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.2e-32 142.9 80 80.0
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.6e-32 142.5 79 82.3
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 1.6e-32 142.5 79 82.3
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 2.0e-32 142.1 89 74.2
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 2.0e-32 142.1 89 74.2
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 2.0e-32 142.1 89 74.2
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 2.6e-32 141.7 89 74.2
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 3.5e-32 141.4 81 79.0
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.5e-32 141.4 81 79.0
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 3.5e-32 141.4 79 81.0
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 4.5e-32 141.0 80 76.2
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 5.9e-32 140.6 80 76.2
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 7.7e-32 140.2 81 79.0
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 7.7e-32 140.2 81 79.0
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.0e-31 139.8 80 78.8
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 1.3e-31 139.4 80 76.2
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 1.7e-31 139.0 84 71.4
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 2.2e-31 138.7 98 68.4
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 2.2e-31 138.7 89 73.0
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.2e-31 138.7 84 72.6
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 2.2e-31 138.7 87 77.0
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 5.0e-31 137.5 81 72.8
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.1e-30 136.3 98 67.3
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.1e-30 136.3 75 80.0
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 7.2e-30 133.7 79 70.9
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.2e-29 132.9 88 69.3
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 1.2e-29 132.9 79 77.2
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.1e-29 132.1 73 82.2
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 3.6e-29 131.3 89 69.7
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 4.7e-29 131.0 74 74.3
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 1.4e-28 129.4 77 71.4
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.8e-28 129.0 89 67.4
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.8e-28 129.0 89 68.5
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 4.0e-28 127.9 79 72.2
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 5.2e-28 127.5 65 86.2
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 6.7e-28 127.1 89 67.4
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 6.7e-28 127.1 75 77.3
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.2e-27 126.3 89 67.4
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.5e-27 125.9 89 66.3
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.5e-27 125.9 84 66.7
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.5e-27 125.9 68 80.9
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 2.0e-27 125.6 80 71.2
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.3e-27 124.8 89 67.4
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 3.3e-27 124.8 89 67.4
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 4.4e-27 124.4 82 64.6
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.3e-26 122.9 63 85.7
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 3.7e-26 121.3 89 64.0
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 4.8e-26 120.9 72 72.2
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 6.3e-26 120.6 79 68.4
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 6.3e-26 120.6 79 63.3
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 6.3e-26 120.6 89 61.8
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 8.3e-26 120.2 66 78.8
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 8.3e-26 120.2 90 61.1
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 8.3e-26 120.2 90 61.1
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.1e-25 119.8 89 62.9
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 1.1e-25 119.8 79 64.6
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.1e-25 119.8 90 62.2
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.1e-25 119.8 68 75.0
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.4e-25 119.4 79 67.1
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-25 119.4 68 76.5
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-25 119.4 68 76.5
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.4e-25 119.4 81 69.1
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 64.6
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 67.1
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 67.1
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 67.1
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 90 60.0
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 64.6
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.8e-25 119.0 83 62.7
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 2.4e-25 118.6 89 65.2
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 3.1e-25 118.2 78 70.5
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 3.1e-25 118.2 79 64.6
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 4.1e-25 117.9 75 70.7
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.1e-25 117.9 80 63.8
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.1e-25 117.9 80 63.8
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 4.1e-25 117.9 73 72.6
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 7.0e-25 117.1 84 60.7
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.2e-24 116.3 79 63.3
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.2e-24 116.3 80 62.5
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.6e-24 115.9 79 63.3
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.6e-24 115.9 90 58.9
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.6e-24 115.9 64 79.7
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 2.0e-24 115.5 75 69.3
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 2.0e-24 115.5 79 63.3
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 2.0e-24 115.5 77 63.6
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.5e-24 114.8 79 67.1
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.5e-24 114.8 84 57.1
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 7.7e-24 113.6 77 62.3
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.3e-23 112.8 88 58.0
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.9e-23 111.7 73 63.0
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.8e-23 111.3 84 54.8
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 8.5e-23 110.2 91 56.0
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.1e-22 109.8 79 62.0
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.1e-22 109.8 72 69.4
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 3.2e-22 108.2 74 64.9
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 7.2e-22 107.1 74 67.6
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 7.2e-22 107.1 84 54.8
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 1.2e-21 106.3 71 63.4
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 2.1e-21 105.5 84 53.6
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.7e-21 105.1 89 59.6
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.7e-21 105.1 52 90.4
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 4.7e-21 104.4 72 62.5
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 6.1e-21 104.0 67 68.7
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 8.0e-21 103.6 108 47.2
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 1.4e-20 102.8 90 54.4
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 2.3e-20 102.1 90 53.3
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 2.3e-20 102.1 80 61.2
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 3.0e-20 101.7 53 79.2
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 5.2e-20 100.9 52 80.8
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 5.2e-20 100.9 75 68.0
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 8.8e-20 100.1 72 68.1
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.2e-19 99.8 54 74.1
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.0e-19 99.0 55 76.4
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 2.6e-19 98.6 91 52.7
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.4e-19 98.2 56 76.8
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 3.4e-19 98.2 72 62.5
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 4.4e-19 97.8 85 55.3
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 9.8e-19 96.7 76 51.3
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.3e-18 96.3 68 57.4
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 3.7e-18 94.7 52 78.8
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.8e-18 94.4 90 54.4
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 7.0e-17 90.5 93 48.4
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.6e-16 89.4 57 64.9
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 7.7e-16 87.0 100 46.0
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 3.8e-15 84.7 77 48.1
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 5.0e-15 84.3 72 58.3
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 8.6e-15 83.6 66 50.0
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.5e-14 82.8 73 57.5
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 1.9e-14 82.4 49 73.5
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 4.2e-14 81.3 41 85.4
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 7.5e-11 70.5 45 66.7
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 3.7e-10 68.2 59 49.2
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 1.1e-09 66.6 53 60.4
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 3.5e-08 61.6 56 46.4
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 1.0e-07 60.1 60 41.7
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 1.1e-06 56.6 93 34.4


User provided reference genes

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