Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 0.0e+00 1343.9 1049 100.0
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 3.1e-241 839.3 1058 74.4
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 9.9e-179 631.7 1059 65.8
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 9.0e-164 582.0 1051 62.1
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 6.5e-162 575.9 1054 61.7
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 2.7e-152 543.9 1065 60.4
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 2.0e-147 527.7 1054 61.5
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.6e-147 527.3 1054 61.5
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 7.7e-147 525.8 1057 61.1
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 6.1e-144 516.2 1059 61.2
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 1.8e-143 514.6 1059 59.4
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 2.3e-143 514.2 1049 61.2
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 5.7e-142 509.6 1023 63.5
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 2.8e-141 507.3 1057 60.5
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.7e-141 506.9 1049 60.6
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 8.2e-141 505.8 1059 59.4
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 7.0e-140 502.7 740 58.2
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 2.2e-138 497.7 1056 58.4
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 3.8e-138 496.9 1025 62.3
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.8e-138 496.9 1049 60.7
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 2.7e-136 490.7 1051 51.2
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 8.0e-136 489.2 1062 60.3
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 1.2e-134 485.3 987 60.4
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 2.0e-134 484.6 741 56.7
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 2.8e-133 480.7 1057 60.5
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 3.7e-133 480.3 1030 61.4
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 9.1e-132 475.7 1055 54.4
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 3.8e-130 470.3 743 57.6
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 1.5e-129 468.4 742 54.3
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 1.0e-127 462.2 918 66.7
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 2.0e-126 458.0 1066 57.1
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 3.7e-125 453.8 722 56.2
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 7.7e-123 446.0 739 53.3
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 2.9e-122 444.1 1044 57.5
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 3.3e-121 440.7 739 52.2
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 5.5e-121 439.9 739 52.6
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 2.1e-120 438.0 918 64.1
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 3.6e-120 437.2 722 53.6
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 1.4e-119 435.3 972 61.5
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 3.0e-119 434.1 1051 55.9
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 2.0e-118 431.4 723 53.3
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 7.8e-115 419.5 1052 57.1
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.7e-114 418.3 1049 56.3
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.5e-113 415.2 739 46.3
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 3.3e-113 414.1 744 51.2
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.6e-113 413.3 739 52.8
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 7.3e-113 412.9 739 46.3
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 1.8e-111 408.3 1062 55.3
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 4.0e-111 407.1 1043 55.1
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 6.8e-111 406.4 1060 57.9
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 4.9e-109 400.2 742 53.2
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 2.7e-107 394.4 722 53.5
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 6.6e-106 389.8 1044 56.4
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 5.6e-105 386.7 635 56.9
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 1.7e-101 375.2 584 59.8
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 2.2e-101 374.8 1042 55.2
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 2.2e-101 374.8 744 50.9
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 4.9e-101 373.6 1051 55.9
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 5.4e-100 370.2 1057 47.2
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 3.9e-98 364.0 899 58.1
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 5.2e-95 353.6 746 48.4
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 1.2e-94 352.4 1062 53.3
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.2e-93 348.2 745 49.0
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 8.3e-93 346.3 745 48.3
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 3.2e-92 344.4 744 49.2
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 9.2e-92 342.8 747 48.7
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 3.0e-90 337.8 926 57.7
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 3.9e-90 337.4 745 48.2
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 1.5e-89 335.5 711 51.5
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 7.3e-89 333.2 972 55.8
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 1.1e-87 329.3 745 47.5
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 3.1e-87 327.8 666 44.9
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 8.4e-85 319.7 719 46.6
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 7.6e-78 296.6 667 57.3
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 4.9e-77 293.9 669 54.9
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 2.7e-75 288.1 744 43.4
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 2.3e-74 285.0 1045 40.1
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 1.5e-73 282.3 740 43.5
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 1.5e-73 282.3 740 43.5
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 2.4e-71 275.0 1015 36.6
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 4.0e-71 274.2 965 52.0
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 1.7e-69 268.9 749 46.1
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 8.7e-66 256.5 752 44.4
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 9.6e-65 253.1 754 45.0
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 1.5e-62 245.7 359 41.2
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 1.2e-59 236.1 911 57.1
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.7e-53 215.7 340 35.6
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 3.9e-42 177.9 384 48.4
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 2.2e-40 172.2 228 46.1
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 7.2e-36 157.1 735 40.8
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 1.4e-34 152.9 580 45.9
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 5.2e-26 124.4 210 37.6
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 2.6e-25 122.1 168 37.5
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 3.1e-23 115.2 244 32.0
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 3.6e-19 101.7 655 40.0
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.0e-18 100.1 478 56.1
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 2.3e-18 99.0 439 58.8
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 2.4e-15 89.0 229 26.2
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 7.0e-15 87.4 401 61.1
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 7.0e-15 87.4 136 35.3
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 9.1e-15 87.0 440 58.2
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.3e-13 83.2 401 60.8
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 2.3e-10 72.4 156 31.4
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 1.7e-08 66.2 100 38.0
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 2.8e-08 65.5 95 34.7
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 1.1e-07 63.5 143 30.8
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 2.4e-07 62.4 103 30.1
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 5.4e-07 61.2 99 38.4
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 9.1e-07 60.5 115 31.3
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 2.7e-06 58.9 103 26.2
AL5G28970 Arabidopsis lyrata HOM05D006156 ORTHO05D007699 4.5e-06 58.2 116 28.4
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 4.5e-06 58.2 138 31.2
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 4.5e-06 58.2 115 28.7
CAN.G481.4 Capsicum annuum HOM05D006156 ORTHO05D007699 5.9e-06 57.8 110 30.9
ATR0580G437 Amborella trichopoda HOM05D030519 ORTHO05D021219 7.7e-06 57.4 102 33.3
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 7.7e-06 57.4 104 33.7


User provided reference genes

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