Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.0e-150 535.8 289 100.0
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 2.6e-89 332.8 297 64.6
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.0e-77 294.3 286 64.3
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 8.2e-75 284.6 286 62.2
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 3.1e-74 282.7 296 59.8
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 2.0e-73 280.0 274 66.8
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 2.6e-73 279.6 297 62.3
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 3.2e-71 272.7 289 63.0
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 5.5e-71 271.9 266 62.8
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 4.7e-70 268.9 273 58.2
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 6.1e-70 268.5 296 56.8
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 6.1e-70 268.5 296 56.8
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 1.0e-69 267.7 282 63.1
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 1.0e-69 267.7 297 55.2
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 1.8e-69 266.9 288 61.8
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 3.0e-69 266.2 299 54.5
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 3.9e-69 265.8 288 61.8
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 3.3e-68 262.7 306 55.9
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 1.3e-67 260.8 306 55.6
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.7e-67 260.4 285 56.1
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 2.2e-67 260.0 297 53.9
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.2e-67 260.0 296 56.1
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 8.2e-67 258.1 291 56.0
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 3.1e-66 256.1 306 56.9
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 3.1e-66 256.1 251 60.6
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 5.3e-66 255.4 304 55.9
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.6e-65 253.8 264 56.8
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 3.5e-65 252.7 290 55.5
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 8.5e-64 248.1 299 57.9
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.9e-63 246.9 294 59.2
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 4.2e-63 245.7 278 57.2
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 4.2e-63 245.7 301 56.1
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.1e-62 243.4 291 57.4
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.7e-62 243.0 300 56.3
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.7e-62 243.0 300 56.3
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 1.0e-61 241.1 285 55.1
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 2.3e-61 240.0 303 55.4
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 4.0e-61 239.2 297 54.2
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 5.2e-61 238.8 292 57.9
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 3.4e-60 236.1 300 54.3
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 5.7e-60 235.3 296 54.1
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 5.7e-60 235.3 295 54.6
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 5.7e-60 235.3 287 55.1
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 7.5e-60 235.0 288 55.6
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 1.7e-59 233.8 305 51.8
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 3.7e-59 232.6 298 51.3
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 6.3e-59 231.9 301 52.5
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 8.3e-59 231.5 297 52.9
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 8.3e-59 231.5 297 52.9
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 8.3e-59 231.5 297 52.9
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.4e-58 230.7 301 53.2
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.8e-58 230.3 266 56.0
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 3.1e-58 229.6 280 52.9
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 4.1e-58 229.2 291 52.2
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 4.1e-58 229.2 292 54.5
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 5.3e-58 228.8 294 53.1
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.2e-57 227.6 287 54.0
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 2.0e-57 226.9 286 52.4
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 3.5e-57 226.1 280 52.9
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 4.5e-57 225.7 295 53.2
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.5e-57 225.7 267 52.4
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 5.9e-57 225.3 284 50.0
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.0e-56 224.6 296 52.0
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.3e-56 224.2 296 53.0
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 2.2e-56 223.4 308 54.5
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.9e-56 223.0 310 51.6
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 2.9e-56 223.0 302 48.7
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 2.9e-56 223.0 286 50.3
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 5.0e-56 222.2 286 51.0
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 8.5e-56 221.5 292 51.7
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 1.1e-55 221.1 278 52.5
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.5e-55 220.7 257 52.9
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 1.9e-55 220.3 323 46.7
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 2.5e-55 219.9 293 54.6
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 5.5e-55 218.8 287 49.5
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 5.5e-55 218.8 289 48.1
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 9.4e-55 218.0 299 47.8
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 9.4e-55 218.0 404 43.1
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.2e-54 217.6 292 51.7
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.2e-54 217.6 304 53.3
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.6e-54 217.2 302 48.0
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 1.6e-54 217.2 282 49.3
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 2.7e-54 216.5 293 49.5
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 2.7e-54 216.5 301 50.8
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 2.7e-54 216.5 289 51.6
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 3.6e-54 216.1 293 50.2
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 4.7e-54 215.7 288 55.9
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 1.0e-53 214.5 279 52.7
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 2.3e-53 213.4 279 55.2
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 5.2e-53 212.2 282 47.9
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 5.2e-53 212.2 231 58.0
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 7.5e-52 208.4 269 54.3
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 1.3e-51 207.6 262 51.1
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 3.7e-51 206.1 286 54.2
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.4e-50 203.4 301 50.5
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 4.1e-50 202.6 299 48.2
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 5.4e-50 202.2 279 49.1
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 4.5e-49 199.1 298 49.0
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 1.7e-48 197.2 305 50.5
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 1.5e-47 194.1 284 48.6
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 1.9e-47 193.7 263 45.6
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 5.5e-47 192.2 307 48.9
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 9.5e-47 191.4 309 46.0
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 2.3e-45 186.8 256 55.5
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 2.3e-45 186.8 247 54.3
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 2.6e-44 183.3 305 44.3
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 4.4e-44 182.6 296 50.0
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 3.7e-43 179.5 305 49.8
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 4.9e-43 179.1 289 47.4
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 1.4e-42 177.6 164 64.6
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.4e-42 177.6 289 50.9
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 2.4e-42 176.8 294 50.0
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 3.2e-42 176.4 251 51.8
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 5.4e-42 175.6 266 47.7
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 7.0e-42 175.3 253 53.4
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 3.5e-41 172.9 298 46.3
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.3e-40 171.0 285 44.6
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 8.6e-40 168.3 265 44.2
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 3.3e-39 166.4 240 48.3
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.0e-37 161.4 286 43.7
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.8e-37 160.6 257 43.6
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 2.3e-37 160.2 163 58.3
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 5.8e-36 155.6 240 43.3
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.0e-32 144.8 156 60.3
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 9.5e-31 138.3 161 57.1
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 1.2e-30 137.9 233 41.2
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 8.0e-30 135.2 301 34.6
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 3.4e-28 129.8 292 35.6
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 4.1e-26 122.9 273 37.4
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.0e-24 118.2 307 33.9
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 8.9e-21 105.1 209 42.6
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 9.9e-20 101.7 273 35.5
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.2e-19 100.5 157 42.0
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 7.1e-18 95.5 87 60.9
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 2.8e-14 83.6 201 36.8
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 1.5e-12 77.8 73 57.5
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.4e-10 70.5 57 66.7
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 2.1e-09 67.4 77 45.5
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.3e-08 64.7 92 44.6
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.9e-07 60.8 115 33.0
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 2.5e-07 60.5 96 40.6
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 3.6e-06 56.6 63 47.6
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.6e-06 56.6 43 69.8


User provided reference genes

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