Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 4.7e-124 448.0 240 100.0
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.4e-99 366.7 238 84.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.1e-96 357.1 279 72.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 4.5e-95 351.7 237 77.2
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.0e-94 350.5 261 74.3
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 7.8e-87 324.3 240 71.7
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 3.1e-83 312.4 239 70.7
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 8.9e-83 310.8 235 71.1
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.7e-81 306.6 235 68.9
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 4.9e-81 305.1 236 67.4
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.4e-80 303.5 238 69.3
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.4e-80 303.5 241 67.6
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 7.0e-80 301.2 241 65.1
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.2e-79 300.4 250 66.0
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.7e-79 299.3 239 65.3
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 7.8e-79 297.7 247 65.6
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.3e-78 297.0 242 66.1
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 6.6e-78 294.7 238 66.8
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 6.6e-78 294.7 237 64.6
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.5e-77 293.5 237 64.1
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.5e-77 293.5 239 67.4
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.9e-77 293.1 233 64.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.9e-77 293.1 233 64.8
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.5e-77 292.7 234 67.5
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.5e-77 292.7 233 65.2
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.3e-77 292.4 234 67.9
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.3e-77 292.0 234 67.5
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 4.3e-77 292.0 238 66.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 9.5e-77 290.8 234 67.1
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 9.5e-77 290.8 239 65.3
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 9.5e-77 290.8 239 63.6
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.2e-76 290.4 233 64.8
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.2e-76 290.4 233 65.2
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.2e-76 290.4 241 63.5
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.6e-76 290.0 233 64.8
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 2.1e-76 289.7 234 65.8
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.1e-76 289.7 239 64.4
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.1e-76 289.7 238 67.2
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.8e-76 289.3 243 64.6
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 3.6e-76 288.9 239 65.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.6e-76 288.9 234 65.0
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 2.3e-75 286.2 241 63.1
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 3.1e-75 285.8 241 63.1
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.0e-75 285.4 236 65.3
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 6.8e-75 284.6 229 68.1
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.6e-74 282.7 239 61.1
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 7.5e-74 281.2 240 64.2
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.3e-73 280.4 235 65.5
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 3.7e-73 278.9 239 61.9
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 4.9e-73 278.5 231 62.8
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 6.4e-73 278.1 241 64.3
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 8.3e-73 277.7 242 62.4
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.4e-72 276.2 239 59.8
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 7.1e-72 274.6 239 62.8
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 9.2e-72 274.2 230 62.2
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.2e-71 273.9 233 62.2
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 4.6e-71 271.9 227 62.1
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 7.8e-71 271.2 234 61.1
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.0e-70 270.8 234 62.0
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.3e-70 270.4 233 61.4
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.3e-70 270.4 238 61.3
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.3e-70 270.4 231 61.9
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.7e-70 270.0 234 61.5
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.7e-70 270.0 232 63.4
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.3e-70 269.6 235 59.6
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 3.0e-70 269.2 235 61.7
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 3.0e-70 269.2 239 61.5
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 3.9e-70 268.9 241 59.8
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.9e-70 268.9 234 60.7
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 5.1e-70 268.5 237 61.2
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.1e-70 268.5 234 60.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 8.6e-70 267.7 234 61.5
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 8.6e-70 267.7 234 61.5
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.1e-69 267.3 243 58.0
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.5e-69 266.9 234 61.5
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.9e-69 266.5 234 61.5
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.9e-69 266.5 233 59.7
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.5e-69 266.2 231 61.0
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 4.3e-69 265.4 241 58.5
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 5.6e-69 265.0 217 66.4
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 3.6e-68 262.3 231 60.6
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 4.7e-68 261.9 234 59.4
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.1e-67 260.8 228 60.1
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.1e-67 260.8 241 57.3
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 2.3e-67 259.6 233 60.5
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 2.3e-67 259.6 236 59.7
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 4.0e-67 258.8 228 60.5
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.2e-67 258.5 234 59.0
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 8.9e-67 257.7 230 58.3
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.6e-66 256.1 234 58.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 3.4e-66 255.8 233 59.2
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 7.6e-66 254.6 233 56.7
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 9.9e-66 254.2 234 58.1
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-65 253.8 234 59.4
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.3e-65 253.8 234 60.3
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.7e-65 253.4 219 61.6
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 3.8e-65 252.3 234 59.0
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.9e-64 250.0 234 56.4
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.4e-64 249.6 238 60.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 5.4e-64 248.4 231 58.4
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-63 247.3 231 58.9
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 6.0e-63 245.0 234 58.5
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.0e-62 244.2 163 75.5
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 2.3e-62 243.0 240 55.8
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 3.0e-62 242.7 178 67.4
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.9e-62 242.3 230 57.0
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 6.6e-62 241.5 229 60.3
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.5e-61 240.4 234 56.8
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.9e-61 240.0 234 56.8
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 5.6e-61 238.4 234 57.3
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.6e-60 236.9 144 82.6
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.8e-60 236.1 240 51.2
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 8.1e-60 234.6 232 55.6
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 2.1e-55 219.9 163 69.3
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.3e-54 217.2 245 49.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 3.9e-54 215.7 161 67.7
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 9.6e-53 211.1 154 66.9
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 9.6e-53 211.1 144 74.3
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.3e-52 210.7 241 47.7
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.1e-52 209.9 236 50.8
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 6.2e-52 208.4 186 64.5
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 8.1e-52 208.0 239 51.5
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.4e-51 207.2 158 65.8
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.8e-50 201.8 181 62.4
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.8e-49 199.1 141 72.3
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 8.4e-49 198.0 241 51.5
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.2e-47 194.1 179 58.7
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.2e-42 177.6 247 48.6
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.2e-42 177.6 235 48.1
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 7.6e-42 174.9 228 44.7
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 4.2e-40 169.1 234 45.7
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.7e-39 166.4 192 51.6
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.0e-39 165.2 187 51.3
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 2.8e-36 156.4 135 63.7
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 6.2e-36 155.2 191 46.1
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 8.2e-36 154.8 126 69.0
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 1.5e-34 150.6 112 64.3
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 2.0e-34 150.2 113 63.7
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.2e-31 141.0 230 39.6
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.2e-31 141.0 233 35.2
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 2.1e-31 140.2 113 65.5
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.6e-31 139.0 141 55.3
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 3.9e-30 136.0 183 45.4
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.3e-28 128.6 145 51.0
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 4.1e-27 125.9 179 45.3
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.0e-25 121.3 238 33.2
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.2e-23 114.4 90 66.7
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.0e-22 111.3 89 67.4
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.8e-22 110.5 238 35.3
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 3.9e-22 109.4 140 48.6
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 1.7e-20 104.0 112 50.9
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 4.1e-19 99.4 123 49.6
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.6e-18 96.7 150 42.7
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.6e-18 96.7 94 59.6
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.6e-18 96.7 94 59.6
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.4e-18 96.3 93 60.2
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.5e-18 95.9 58 75.9
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.5e-17 91.7 103 56.3
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.5e-16 90.1 70 65.7
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.7e-15 85.9 183 37.2
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.4e-14 84.3 53 75.5
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 3.9e-14 82.8 106 44.3
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 6.7e-14 82.0 75 61.3
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.7e-14 82.0 82 54.9
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 8.8e-14 81.6 52 73.1
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-13 81.3 53 73.6
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-13 81.3 53 73.6
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-13 80.1 221 31.2
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-13 80.1 221 31.2
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 3.7e-12 76.3 53 66.0
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 4.8e-12 75.9 100 47.0
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 6.9e-11 72.0 90 47.8
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 9.1e-11 71.6 90 50.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.6e-10 70.1 91 44.0
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-10 70.1 131 42.0
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 5.9e-10 68.9 51 64.7
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.9e-09 66.6 78 48.7
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.9e-08 63.9 92 41.3
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 7.2e-08 62.0 44 70.5
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 4.7e-07 59.3 94 39.4
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 1.8e-06 57.4 45 71.1


User provided reference genes

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