Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01792 Erythranthe guttata HOM05D000204 ORTHO05D005102 4.0e-33 144.1 67 100.0
Rhsim03G0074000 Rhododendron simsii HOM05D000204 ORTHO05D005102 5.6e-19 97.1 52 84.6
GSVIVG01033868001 Vitis vinifera HOM05D000204 ORTHO05D005102 8.1e-18 93.2 52 78.8
TAR636G2399 Trochodendron aralioides HOM05D000204 ORTHO05D005102 1.4e-17 92.4 52 78.8
Solyc10g083320.3 Solanum lycopersicum HOM05D000204 ORTHO05D005102 1.8e-17 92.0 52 78.8
Sopen10g032800 Solanum pennellii HOM05D000204 ORTHO05D005102 1.8e-17 92.0 52 78.8
PGSC0003DMG400028254 Solanum tuberosum HOM05D000204 ORTHO05D005102 1.8e-17 92.0 52 78.8
Cc06_g06020 Coffea canephora HOM05D000204 ORTHO05D005102 2.4e-17 91.7 52 80.8
PGR004G2330 Punica granatum HOM05D000204 ORTHO05D005102 4.0e-17 90.9 52 78.8
Solyc09g009980.3 Solanum lycopersicum HOM05D000204 ORTHO05D005102 4.0e-17 90.9 52 76.9
PGSC0003DMG400008950 Solanum tuberosum HOM05D000204 ORTHO05D005102 4.0e-17 90.9 52 76.9
Oeu047206.1 Olea europaea HOM05D000204 ORTHO05D005102 5.3e-17 90.5 52 78.8
Oeu047207.1 Olea europaea HOM05D000204 ORTHO05D005102 5.3e-17 90.5 52 78.8
SalBow5G4557 Salvia bowleyana HOM05D000204 ORTHO05D005102 5.3e-17 90.5 52 78.8
SGA_v2.0_scaffold35G14049 Striga asiatica HOM05D000204 ORTHO05D005102 5.3e-17 90.5 52 76.9
Aqoxy4G02741 Aquilegia oxysepala HOM05D000204 ORTHO05D005102 6.9e-17 90.1 52 76.9
RcHm_v2.0_Chr3g0474301 Rosa chinensis HOM05D000204 ORTHO05D005102 6.9e-17 90.1 51 78.4
CAN.G1069.14 Capsicum annuum HOM05D000204 ORTHO05D005102 9.0e-17 89.7 52 76.9
Sopen09g004730 Solanum pennellii HOM05D000204 ORTHO05D005102 9.0e-17 89.7 52 76.9
Oeu025670.1 Olea europaea HOM05D000204 ORTHO05D005102 1.2e-16 89.4 52 76.9
CAN.G334.10 Capsicum annuum HOM05D000204 ORTHO05D005102 1.5e-16 89.0 52 76.9
CAN.G397.68 Capsicum annuum HOM05D000204 ORTHO05D005102 1.5e-16 89.0 52 76.9
Manes.08G026900 Manihot esculenta HOM05D000204 ORTHO05D005102 1.5e-16 89.0 52 76.9
ClCG04G010130 Citrullus lanatus HOM05D000204 ORTHO05D005102 2.0e-16 88.6 52 73.1
Nitab4.5_0000692g0170 Nicotiana tabacum HOM05D000204 ORTHO05D005102 2.0e-16 88.6 52 76.9
Oeu023809.1 Olea europaea HOM05D000204 ORTHO05D005102 2.0e-16 88.6 51 80.4
FvH4_6g19170 Fragaria vesca HOM05D000204 ORTHO05D005102 4.5e-16 87.4 51 76.5
FAN02G1065 Fragaria x ananassa HOM05D000204 ORTHO05D005102 4.5e-16 87.4 51 76.5
FAN14G3391 Fragaria x ananassa HOM05D000204 ORTHO05D005102 4.5e-16 87.4 51 76.5
Prupe.7G104000 Prunus persica HOM05D000204 ORTHO05D005102 4.5e-16 87.4 51 74.5
FAN09G0518 Fragaria x ananassa HOM05D000204 ORTHO05D005102 5.8e-16 87.0 51 76.5
FAN09G1586 Fragaria x ananassa HOM05D000204 ORTHO05D005102 5.8e-16 87.0 51 76.5
Duzib093G2130 Durio zibethinus HOM05D000204 ORTHO05D005102 7.6e-16 86.7 52 71.2
Manes.09G053700 Manihot esculenta HOM05D000204 ORTHO05D005102 7.6e-16 86.7 69 60.9
MELO3C024553.2 Cucumis melo HOM05D000204 ORTHO05D005102 9.9e-16 86.3 52 69.2
MD14G1028000 Malus domestica HOM05D000204 ORTHO05D005102 9.9e-16 86.3 51 74.5
Peaxi162Scf00166g00132 Petunia axillaris HOM05D000204 ORTHO05D005102 9.9e-16 86.3 51 74.5
Thecc.05G091800 Theobroma cacao HOM05D000204 ORTHO05D005102 9.9e-16 86.3 52 71.2
TAR633G1312 Trochodendron aralioides HOM05D000204 ORTHO05D005102 9.9e-16 86.3 52 75.0
Eucgr.K02026 Eucalyptus grandis HOM05D000204 ORTHO05D005102 1.3e-15 85.9 52 71.2
Eucgr.K02555 Eucalyptus grandis HOM05D000204 ORTHO05D005102 1.3e-15 85.9 52 71.2
Sed0016679 Sechium edule HOM05D000204 ORTHO05D005102 1.3e-15 85.9 52 71.2
Sc02g0000350 Simmondsia chinensis HOM05D000204 ORTHO05D005102 1.3e-15 85.9 51 70.6
DCAR_013403 Daucus carota HOM05D000204 ORTHO05D005102 1.7e-15 85.5 51 76.5
Potri.006G211000 Populus trichocarpa HOM05D000204 ORTHO05D005102 1.7e-15 85.5 52 73.1
Sabra06G0162500 Salix brachista HOM05D000204 ORTHO05D005102 1.7e-15 85.5 52 73.1
Nn6g34853 Nelumbo nucifera HOM05D000204 ORTHO05D005102 2.2e-15 85.1 52 71.2
Oeu047854.1 Olea europaea HOM05D000204 ORTHO05D005102 2.2e-15 85.1 52 78.8
ECA247G4096 Erigeron canadensis HOM05D000204 ORTHO05D005102 2.9e-15 84.7 52 71.2
Lsat_1_v5_gn_9_20900 Lactuca sativa HOM05D000204 ORTHO05D005102 2.9e-15 84.7 52 71.2
Nn2g14194 Nelumbo nucifera HOM05D000204 ORTHO05D005102 2.9e-15 84.7 52 71.2
Duzib128G1821 Durio zibethinus HOM05D000204 ORTHO05D005102 3.8e-15 84.3 52 71.2
Gohir.A09G140000 Gossypium hirsutum HOM05D000204 ORTHO05D005102 6.4e-15 83.6 52 69.2
Gohir.D09G134500 Gossypium hirsutum HOM05D000204 ORTHO05D005102 6.4e-15 83.6 52 69.2
HanXRQChr08g0229791 Helianthus annuus HOM05D000204 ORTHO05D005102 6.4e-15 83.6 52 71.2
Peaxi162Scf00096g00052 Petunia axillaris HOM05D000204 ORTHO05D005102 6.4e-15 83.6 52 73.1
COL.COLO4_29698 Corchorus olitorius HOM05D000204 ORTHO05D005102 8.4e-15 83.2 52 65.4
MD12G1027600 Malus domestica HOM05D000204 ORTHO05D005102 8.4e-15 83.2 51 72.5
FAN05G1627 Fragaria x ananassa HOM05D000204 ORTHO05D005102 1.1e-14 82.8 49 73.5
MSTRG.26633 Avicennia marina HOM05D000204 ORTHO05D005102 2.4e-14 81.6 51 78.4
Haze_19631 Corylus avellana HOM05D000204 ORTHO05D005102 3.2e-14 81.3 52 67.3
Gorai.009G400900 Gossypium raimondii HOM05D000204 ORTHO05D005102 3.2e-14 81.3 52 63.5
Nitab4.5_0001933g0020 Nicotiana tabacum HOM05D000204 ORTHO05D005102 3.2e-14 81.3 45 75.6
CiPaw.10G011300 Carya illinoinensis HOM05D000204 ORTHO05D005102 4.2e-14 80.9 52 69.2
TWI74G0598 Tripterygium wilfordii HOM05D000204 ORTHO05D005102 4.2e-14 80.9 52 69.2
QL07p038584 Quercus lobata HOM05D000204 ORTHO05D005102 5.5e-14 80.5 51 66.7
HanXRQChr04g0103581 Helianthus annuus HOM05D000204 ORTHO05D005102 7.1e-14 80.1 52 67.3
Cpa.g.sc104.113 Carica papaya HOM05D000204 ORTHO05D005102 1.2e-13 79.3 52 71.2
CiPaw.09G015700 Carya illinoinensis HOM05D000204 ORTHO05D005102 1.2e-13 79.3 52 67.3
Gohir.A04G061700 Gossypium hirsutum HOM05D000204 ORTHO05D005102 1.2e-13 79.3 52 65.4
Ca_00894_v3 Cicer arietinum L. HOM05D000204 ORTHO05D005102 1.6e-13 79.0 52 63.5
CANSAT64G0698 Cannabis sativa HOM05D000204 ORTHO05D005102 3.5e-13 77.8 52 65.4
Glyma.10G074500 Glycine max HOM05D000204 ORTHO05D005102 3.5e-13 77.8 50 66.0
Ciclev10013674m.g Citrus clementina HOM05D000204 ORTHO05D005102 4.6e-13 77.4 52 67.3
Lsat_1_v5_gn_8_78180 Lactuca sativa HOM05D000204 ORTHO05D005102 4.6e-13 77.4 52 65.4
Lj1g0017412 Lotus japonicus HOM05D000204 ORTHO05D005102 4.6e-13 77.4 52 63.5
PSO801G0594 Papaver somniferum HOM05D000204 ORTHO05D005102 4.6e-13 77.4 49 61.2
Glyma.02G202200 Glycine max HOM05D000204 ORTHO05D005102 6.0e-13 77.0 50 66.0
Lj5g0007516 Lotus japonicus HOM05D000204 ORTHO05D005102 6.0e-13 77.0 50 66.0
TWI53G1092 Tripterygium wilfordii HOM05D000204 ORTHO05D005102 6.0e-13 77.0 52 65.4
TAR369G0485 Trochodendron aralioides HOM05D000204 ORTHO05D005102 6.0e-13 77.0 50 66.0
Atru.chr8.1474 Acer truncatum HOM05D000204 ORTHO05D005102 7.9e-13 76.6 51 64.7
Ah.08g210480 Amaranthus hybridus HOM05D000204 ORTHO05D005102 7.9e-13 76.6 52 67.3
PSO339G3415 Papaver somniferum HOM05D000204 ORTHO05D005102 7.9e-13 76.6 49 61.2
PSO384G4360 Papaver somniferum HOM05D000204 ORTHO05D005102 7.9e-13 76.6 50 66.0
Glyma.19G195200 Glycine max HOM05D000204 ORTHO05D005102 1.0e-12 76.3 52 63.5
HanXRQChr08g0229801 Helianthus annuus HOM05D000204 ORTHO05D005102 1.0e-12 76.3 51 62.7
MBI17_g42229_MAGBIO Magnolia biondii HOM05D000204 ORTHO05D005102 1.0e-12 76.3 51 62.7
MBI17_g46660_MAGBIO Magnolia biondii HOM05D000204 ORTHO05D005102 1.0e-12 76.3 51 62.7
Medtr1g059770 Medicago truncatula HOM05D000204 ORTHO05D005102 1.3e-12 75.9 52 59.6
VMungo0720G1555 Vigna mungo HOM05D000204 ORTHO05D005102 1.3e-12 75.9 50 64.0
Ah.15g090700 Amaranthus hybridus HOM05D000204 ORTHO05D005102 2.3e-12 75.1 52 63.5
HanXRQChr05g0133581 Helianthus annuus HOM05D000204 ORTHO05D005102 2.3e-12 75.1 52 67.3
Lsat_1_v5_gn_9_20800 Lactuca sativa HOM05D000204 ORTHO05D005102 2.3e-12 75.1 51 62.7
Medtr7g104940 Medicago truncatula HOM05D000204 ORTHO05D005102 2.3e-12 75.1 52 63.5
VMungo1383G0901 Vigna mungo HOM05D000204 ORTHO05D005102 2.3e-12 75.1 52 61.5
HanXRQChr06g0176121 Helianthus annuus HOM05D000204 ORTHO05D005102 3.0e-12 74.7 52 65.4
Medtr7g104950 Medicago truncatula HOM05D000204 ORTHO05D005102 3.0e-12 74.7 52 63.5
TPR.G14769 Trifolium pratense HOM05D000204 ORTHO05D005102 3.0e-12 74.7 51 58.8
TPR.G23329 Trifolium pratense HOM05D000204 ORTHO05D005102 3.9e-12 74.3 70 52.9
Glyma.03G197200 Glycine max HOM05D000204 ORTHO05D005102 5.1e-12 73.9 52 61.5
Lalb_Chr06g0172431 Lupinus albus HOM05D000204 ORTHO05D005102 6.7e-12 73.6 52 65.4
Psat3g032080 Pisum sativum HOM05D000204 ORTHO05D005102 1.1e-11 72.8 70 52.9
Phvul.007G227100 Phaseolus vulgaris HOM05D000204 ORTHO05D005102 1.9e-11 72.0 50 60.0
AUR62006201 Chenopodium quinoa HOM05D000204 ORTHO05D005102 2.5e-11 71.6 51 62.7
AUR62037017 Chenopodium quinoa HOM05D000204 ORTHO05D005102 2.5e-11 71.6 51 60.8
Psat0s34g0040 Pisum sativum HOM05D000204 ORTHO05D005102 2.5e-11 71.6 52 59.6
ATR0820G248 Amborella trichopoda HOM05D000204 ORTHO05D005102 4.3e-11 70.9 50 60.0
Sed0011389 Sechium edule HOM05D000204 ORTHO05D005102 5.6e-11 70.5 52 57.7
ClCG10G018840 Citrullus lanatus HOM05D000204 ORTHO05D005102 1.3e-10 69.3 52 55.8
THA.LOC104823491 Tarenaya hassleriana HOM05D000204 ORTHO05D005102 2.8e-10 68.2 53 60.4
HanXRQChr17g0542711 Helianthus annuus HOM05D000204 ORTHO05D005102 6.2e-10 67.0 49 61.2
SGA_v2.0_scaffold13G06708 Striga asiatica HOM05D000204 ORTHO05D005102 1.1e-09 66.2 52 65.4
MELO3C009483.2 Cucumis melo HOM05D000204 ORTHO05D005102 1.8e-09 65.5 52 53.8
Sabra06G0162600 Salix brachista HOM05D000204 ORTHO05D005102 1.8e-09 65.5 39 69.2
Thhalv10017557m.g Eutrema salsugineum HOM05D000204 ORTHO05D005102 2.4e-09 65.1 53 54.7
Lalb_Chr02g0154871 Lupinus albus HOM05D000204 ORTHO05D005102 2.4e-09 65.1 52 55.8
Carub.0004s1797 Capsella rubella HOM05D000204 ORTHO05D005102 6.9e-09 63.5 53 54.7
AT2G36210 Arabidopsis thaliana HOM05D000204 ORTHO05D005102 9.0e-09 63.2 53 54.7
HanXRQChr09g0260061 Helianthus annuus HOM05D000204 ORTHO05D005102 9.0e-09 63.2 49 51.0
Lsat_1_v5_gn_3_39200 Lactuca sativa HOM05D000204 ORTHO05D005102 9.0e-09 63.2 49 55.1
AL4G32310 Arabidopsis lyrata HOM05D000204 ORTHO05D005102 1.2e-08 62.8 53 54.7
EL10Ac7g16899 Beta vulgaris HOM05D000204 ORTHO05D005102 1.2e-08 62.8 41 65.9
BcaC02g07622 Brassica carinata HOM05D000204 ORTHO05D005102 1.2e-08 62.8 53 54.7
BolC4t28003H Brassica oleracea HOM05D000204 ORTHO05D005102 1.2e-08 62.8 53 54.7
CARHR130450 Cardamine hirsuta HOM05D000204 ORTHO05D005102 1.2e-08 62.8 53 54.7
BcaB06g28922 Brassica carinata HOM05D000204 ORTHO05D005102 2.0e-08 62.0 53 54.7
BolC4t22841H Brassica oleracea HOM05D000204 ORTHO05D005102 2.0e-08 62.0 53 52.8
A03p19990 Brassica napus HOM05D000204 ORTHO05D005102 4.5e-08 60.8 53 52.8
BraA03t11250Z Brassica rapa HOM05D000204 ORTHO05D005102 4.5e-08 60.8 53 52.8
BcaNung07100 Brassica carinata HOM05D000204 ORTHO05D005102 5.8e-08 60.5 53 50.9
A04p27720 Brassica napus HOM05D000204 ORTHO05D005102 5.8e-08 60.5 53 52.8
A05p09630 Brassica napus HOM05D000204 ORTHO05D005102 5.8e-08 60.5 53 50.9
C04p11970 Brassica napus HOM05D000204 ORTHO05D005102 5.8e-08 60.5 53 50.9
BraA04t18266Z Brassica rapa HOM05D000204 ORTHO05D005102 5.8e-08 60.5 53 52.8
BraA05t19917Z Brassica rapa HOM05D000204 ORTHO05D005102 5.8e-08 60.5 53 50.9
BcaC02g07623 Brassica carinata HOM05D000204 ORTHO05D005102 1.0e-07 59.7 53 52.8
BcaC02g11723 Brassica carinata HOM05D000204 ORTHO05D005102 1.0e-07 59.7 53 50.9
BolC4t28002H Brassica oleracea HOM05D000204 ORTHO05D005102 1.0e-07 59.7 53 52.8
BcaB02g09376 Brassica carinata HOM05D000204 ORTHO05D005102 1.3e-07 59.3 53 50.9
C03p23430 Brassica napus HOM05D000204 ORTHO05D005102 1.3e-07 59.3 53 50.9
BolC3t14739H Brassica oleracea HOM05D000204 ORTHO05D005102 1.3e-07 59.3 53 50.9
Lsat_1_v5_gn_4_65581 Lactuca sativa HOM05D000204 ORTHO05D005102 1.3e-07 59.3 52 59.6
Dinv21188 Davidia involucrata HOM05D000204 ORTHO05D005102 1.7e-07 58.9 40 65.0
Aa31LG5G21330 Aethionema arabicum HOM05D000204 ORTHO05D005102 2.9e-07 58.2 53 50.9
A04p27710 Brassica napus HOM05D000204 ORTHO05D005102 4.9e-07 57.4 53 50.9
BraA04t18265Z Brassica rapa HOM05D000204 ORTHO05D005102 4.9e-07 57.4 53 50.9
HanXRQChr10g0301211 Helianthus annuus HOM05D000204 ORTHO05D005102 4.9e-07 57.4 52 55.8
Sp4g18430 Schrenkiella parvula HOM05D000204 ORTHO05D005102 6.5e-07 57.0 53 47.2
Actinidia24387 Actinidia chinensis HOM05D000204 ORTHO05D005102 8.4e-07 56.6 30 80.0
Actinidia05416 Actinidia chinensis HOM05D000204 ORTHO05D005102 1.4e-06 55.8 30 80.0
CSS0035781 Camellia sinensis var. sinensis HOM05D000057 ORTHO05D005102 1.9e-06 55.5 34 70.6
BcaB06g28921 Brassica carinata HOM05D000204 ORTHO05D005102 7.1e-06 53.5 53 47.2
HPP92_011498 Vanilla planifolia HOM05D000204 ORTHO05D428175 7.1e-06 53.5 51 45.1


User provided reference genes

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