Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01772 Erythranthe guttata HOM05D003360 ORTHO05D003759 4.4e-25 117.5 74 100.0
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 7.4e-12 73.6 47 78.7
SalBow3G2714 Salvia bowleyana HOM05D003360 ORTHO05D003759 2.1e-11 72.0 77 59.7
Migut.J01052 Erythranthe guttata HOM05D003360 ORTHO05D003759 4.8e-11 70.9 75 60.0
Oeu009227.1 Olea europaea HOM05D003360 ORTHO05D003759 4.8e-11 70.9 74 58.1
unitig_744.g24695 Utricularia gibba HOM05D003360 ORTHO05D003759 8.1e-11 70.1 47 72.3
unitig_27.g25402 Utricularia gibba HOM05D003360 ORTHO05D003759 1.4e-10 69.3 47 74.5
unitig_30.g34057 Utricularia gibba HOM05D003360 ORTHO05D003759 1.4e-10 69.3 47 74.5
unitig_749.g14295 Utricularia gibba HOM05D003360 ORTHO05D003759 3.1e-10 68.2 72 55.6
Hma1.2p1_0084F.1_g043630 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 1.5e-09 65.9 44 72.7
Sopen09g004380 Solanum pennellii HOM05D003360 ORTHO05D003759 2.6e-09 65.1 47 68.1
PGSC0003DMG400002695 Solanum tuberosum HOM05D003360 ORTHO05D003759 2.6e-09 65.1 47 68.1
CSS0017316 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 3.4e-09 64.7 45 68.9
Cpa.g.sc5.39 Carica papaya HOM05D003360 ORTHO05D003759 4.5e-09 64.3 45 66.7
Cfa016591 Carpinus fangiana HOM05D003360 ORTHO05D003759 4.5e-09 64.3 45 66.7
Haze_19591 Corylus avellana HOM05D003360 ORTHO05D003759 4.5e-09 64.3 45 66.7
MD14G1020700 Malus domestica HOM05D003360 ORTHO05D003759 4.5e-09 64.3 45 66.7
HPP92_000039 Vanilla planifolia HOM05D003360 ORTHO05D003759 5.8e-09 63.9 45 64.4
HPP92_012635 Vanilla planifolia HOM05D003360 ORTHO05D003759 5.8e-09 63.9 45 64.4
CAN.G397.29 Capsicum annuum HOM05D003360 ORTHO05D003759 7.6e-09 63.5 47 66.0
Cc06_g05630 Coffea canephora HOM05D003360 ORTHO05D003759 7.6e-09 63.5 82 50.0
MD12G1023500 Malus domestica HOM05D003360 ORTHO05D003759 1.0e-08 63.2 71 52.1
Os04g0411200 Oryza sativa ssp. japonica HOM05D003360 ORTHO05D003759 1.0e-08 63.2 45 68.9
BcaB01g00342 Brassica carinata HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 68.9
BcaC07g39642 Brassica carinata HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 68.9
A09p45850 Brassica napus HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 68.9
C08p28060 Brassica napus HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 68.9
BolC8t50417H Brassica oleracea HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 68.9
BraA09t40047Z Brassica rapa HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 68.9
Carub.0005s1925 Capsella rubella HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 68.9
Ca_26655_v3 Cicer arietinum L. HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 64.4
Dinv21222 Davidia involucrata HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 64.4
Glyma.10G071100 Glycine max HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 64.4
Lj5g0024704 Lotus japonicus HOM05D003360 ORTHO05D003759 1.3e-08 62.8 46 63.0
Lalb_Chr21g0315791 Lupinus albus HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 64.4
Nn6g34941 Nelumbo nucifera HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 64.4
Potri.006G083201 Populus trichocarpa HOM05D003360 ORTHO05D003759 1.3e-08 62.8 45 64.4
QL07p039321 Quercus lobata HOM05D003360 ORTHO05D003759 1.3e-08 62.8 44 65.9
arahy.Tifrunner.gnm1.ann1.V8S7TV Arachis hypogaea HOM05D003360 ORTHO05D003759 1.7e-08 62.4 45 64.4
arahy.Tifrunner.gnm1.ann1.YCS2XP Arachis hypogaea HOM05D003360 ORTHO05D003759 1.7e-08 62.4 45 64.4
EL10Ac7g16935 Beta vulgaris HOM05D003360 ORTHO05D003759 1.7e-08 62.4 45 64.4
HanXRQChr02g0051411 Helianthus annuus HOM05D003360 ORTHO05D003759 1.7e-08 62.4 44 65.9
Lsat_1_v5_gn_6_24141 Lactuca sativa HOM05D003360 ORTHO05D003759 1.7e-08 62.4 44 65.9
Manes.08G024100 Manihot esculenta HOM05D003360 ORTHO05D003759 1.7e-08 62.4 47 61.7
BcaB02g07817 Brassica carinata HOM05D003360 ORTHO05D003759 2.2e-08 62.0 45 66.7
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 2.2e-08 62.0 47 66.0
Peaxi162Scf00040g10112 Petunia axillaris HOM05D003360 ORTHO05D003759 2.2e-08 62.0 74 52.7
AL5G33550 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 66.7
arahy.Tifrunner.gnm1.ann1.3KS0IU Arachis hypogaea HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 63.8
arahy.Tifrunner.gnm1.ann1.W71F47 Arachis hypogaea HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 63.8
BcaB01g00341 Brassica carinata HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 66.7
BcaB02g08554 Brassica carinata HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 66.7
BcaC02g09220 Brassica carinata HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 66.7
A04p06710 Brassica napus HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 66.0
C04p40170 Brassica napus HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 66.7
BolC4t25595H Brassica oleracea HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 66.7
CANSAT80G2147 Cannabis sativa HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 62.2
CARHR162650 Cardamine hirsuta HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 66.7
CiPaw.09G012500 Carya illinoinensis HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 62.2
CiPaw.10G008200 Carya illinoinensis HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 61.7
COL.COLO4_29771 Corchorus olitorius HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 61.7
Eucgr.K02053 Eucalyptus grandis HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 62.2
Gohir.A04G064385 Gossypium hirsutum HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 61.7
Gohir.D04G100900 Gossypium hirsutum HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 61.7
Gorai.009G404100 Gossypium raimondii HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 61.7
Medtr1g060310 Medicago truncatula HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 62.2
PGR004G2902 Punica granatum HOM05D003360 ORTHO05D003759 2.9e-08 61.6 47 61.7
Sp5g09560 Schrenkiella parvula HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 66.7
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 2.9e-08 61.6 45 62.2
BcaC08g44595 Brassica carinata HOM05D003360 ORTHO05D003759 3.8e-08 61.2 45 66.7
C06p20670 Brassica napus HOM05D003360 ORTHO05D003759 3.8e-08 61.2 45 66.7
BolC6t37250H Brassica oleracea HOM05D003360 ORTHO05D003759 3.8e-08 61.2 45 66.7
BraA04t16375Z Brassica rapa HOM05D003360 ORTHO05D003759 3.8e-08 61.2 47 63.8
DCAR_003370 Daucus carota HOM05D003360 ORTHO05D003759 3.8e-08 61.2 66 51.5
Glyma.13G153018 Glycine max HOM05D003360 ORTHO05D003759 4.9e-08 60.8 43 65.1
TWI74G1584 Tripterygium wilfordii HOM05D003360 ORTHO05D003759 4.9e-08 60.8 45 62.2
TAR623G1482 Trochodendron aralioides HOM05D003360 ORTHO05D003759 4.9e-08 60.8 44 61.4
Ciclev10013416m.g Citrus clementina HOM05D003360 ORTHO05D003759 6.5e-08 60.5 71 49.3
Duzib093G2149 Durio zibethinus HOM05D003360 ORTHO05D003759 6.5e-08 60.5 71 49.3
HanXRQChr13g0402021 Helianthus annuus HOM05D003360 ORTHO05D003759 6.5e-08 60.5 66 47.0
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 6.5e-08 60.5 73 46.6
Zm00001eb242710 Zea mays HOM05D003360 ORTHO05D003759 6.5e-08 60.5 45 64.4
AT3G52770 Arabidopsis thaliana HOM05D003360 ORTHO05D003759 8.4e-08 60.1 45 64.4
Nitab4.5_0002400g0080 Nicotiana tabacum HOM05D003360 ORTHO05D003759 8.4e-08 60.1 79 46.8
Sed0011638 Sechium edule HOM05D003360 ORTHO05D003759 8.4e-08 60.1 45 62.2
CSS0023349 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 1.1e-07 59.7 44 61.4
Haze_05346 Corylus avellana HOM05D003360 ORTHO05D003759 1.1e-07 59.7 42 66.7
Haze_05882 Corylus avellana HOM05D000493 ORTHO05D003759 1.1e-07 59.7 43 65.1
Duzib128G1587 Durio zibethinus HOM05D003360 ORTHO05D003759 1.1e-07 59.7 47 59.6
Nitab4.5_0001725g0010 Nicotiana tabacum HOM05D003360 ORTHO05D003759 1.1e-07 59.7 80 47.5
SHI23956 Sapria himalayana HOM05D003360 ORTHO05D003759 1.1e-07 59.7 70 48.6
GSVIVG01033826001 Vitis vinifera HOM05D003360 ORTHO05D003759 1.1e-07 59.7 43 62.8
BcaC02g07614 Brassica carinata HOM05D003360 ORTHO05D003759 1.4e-07 59.3 45 62.2
BcaC02g07615 Brassica carinata HOM05D003360 ORTHO05D003759 1.4e-07 59.3 45 62.2
A04p27810 Brassica napus HOM05D003360 ORTHO05D003759 1.4e-07 59.3 45 62.2
ClCG10G019100 Citrullus lanatus HOM05D003360 ORTHO05D003759 1.4e-07 59.3 76 50.0
MELO3C009461.2 Cucumis melo HOM05D003360 ORTHO05D003759 1.4e-07 59.3 76 50.0
CsaV3_3G037150 Cucumis sativus L. HOM05D003360 ORTHO05D003759 1.4e-07 59.3 76 50.0
PSO384G1242 Papaver somniferum HOM05D003360 ORTHO05D003759 1.4e-07 59.3 71 47.9
SGA_v2.0_scaffold35G14071 Striga asiatica HOM05D001616 ORTHO05D003701 1.4e-07 59.3 69 47.8
HPP92_000004 Vanilla planifolia HOM05D003360 ORTHO05D003759 1.4e-07 59.3 44 61.4
A07p21190 Brassica napus HOM05D003360 ORTHO05D003759 1.9e-07 58.9 70 47.1
BraA07t29806Z Brassica rapa HOM05D003360 ORTHO05D003759 1.9e-07 58.9 70 47.1
CiPaw.13G038600 Carya illinoinensis HOM05D003360 ORTHO05D003759 1.9e-07 58.9 63 47.6
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 1.9e-07 58.9 45 62.2
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.9e-07 58.9 45 62.2
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.9e-07 58.9 45 62.2
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.9e-07 58.9 45 62.2
Prupe.7G113000 Prunus persica HOM05D003360 ORTHO05D003759 1.9e-07 58.9 77 44.2
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 1.9e-07 58.9 45 62.2
Thecc.05G086800 Theobroma cacao HOM05D003360 ORTHO05D003759 1.9e-07 58.9 71 47.9
Zm00001eb084040 Zea mays HOM05D003360 ORTHO05D003759 1.9e-07 58.9 45 64.4
AL4G32430 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 2.5e-07 58.5 45 60.0
BcaB02g09363 Brassica carinata HOM05D003360 ORTHO05D003759 2.5e-07 58.5 45 60.0
Carub.0004s1807 Capsella rubella HOM05D003360 ORTHO05D003759 2.5e-07 58.5 45 60.0
DCAR_009156 Daucus carota HOM05D003360 ORTHO05D003759 2.5e-07 58.5 44 59.1
Glyma.19G194100 Glycine max HOM05D003360 ORTHO05D003759 2.5e-07 58.5 45 60.0
Gohir.A09G138700 Gossypium hirsutum HOM05D003360 ORTHO05D003759 2.5e-07 58.5 68 48.5
Gorai.006G156000 Gossypium raimondii HOM05D003360 ORTHO05D003759 2.5e-07 58.5 68 48.5
Lj1g0000501 Lotus japonicus HOM05D003360 ORTHO05D003759 2.5e-07 58.5 45 57.8
Sp4g18540 Schrenkiella parvula HOM05D003360 ORTHO05D003759 2.5e-07 58.5 45 60.0
TAR633G1257 Trochodendron aralioides HOM05D003360 ORTHO05D003759 2.5e-07 58.5 47 57.4
CSS0011540 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 3.2e-07 58.2 65 46.2
CARHR130590 Cardamine hirsuta HOM05D003360 ORTHO05D003759 3.2e-07 58.2 46 58.7
Thhalv10011130m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 3.2e-07 58.2 45 62.2
Psat6g080880 Pisum sativum HOM05D003360 ORTHO05D003759 3.2e-07 58.2 45 60.0
THA.LOC109116419 Tarenaya hassleriana HOM05D003360 ORTHO05D003759 3.2e-07 58.2 45 60.0
BcaC02g11743 Brassica carinata HOM05D003360 ORTHO05D003759 4.2e-07 57.8 45 60.0
A05p09550 Brassica napus HOM05D003360 ORTHO05D003759 4.2e-07 57.8 45 60.0
C04p11810 Brassica napus HOM05D003360 ORTHO05D003759 4.2e-07 57.8 45 60.0
BolC4t22830H Brassica oleracea HOM05D003360 ORTHO05D003759 4.2e-07 57.8 45 60.0
Cfa011263 Carpinus fangiana HOM05D003360 ORTHO05D003759 4.2e-07 57.8 47 55.3
Haze_02515 Corylus avellana HOM05D003360 ORTHO05D003759 4.2e-07 57.8 47 55.3
Psat3g033920 Pisum sativum HOM05D003360 ORTHO05D003759 4.2e-07 57.8 45 57.8
BcaB01g03851 Brassica carinata HOM05D003360 ORTHO05D003759 5.5e-07 57.4 45 60.0
BcaB06g28928 Brassica carinata HOM05D003360 ORTHO05D003759 5.5e-07 57.4 70 44.3
MBI01_g47405_MAGBIO Magnolia biondii HOM05D003360 ORTHO05D003759 5.5e-07 57.4 73 46.6
Manes.09G056502 Manihot esculenta HOM05D003360 ORTHO05D003759 5.5e-07 57.4 44 59.1
Medtr7g104410 Medicago truncatula HOM05D003360 ORTHO05D003759 5.5e-07 57.4 45 55.6
Nn2g14121 Nelumbo nucifera HOM05D003360 ORTHO05D003759 7.1e-07 57.0 48 58.3
Sed0007233 Sechium edule HOM05D003360 ORTHO05D003759 7.1e-07 57.0 73 49.3
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 9.3e-07 56.6 46 63.0
BNapus_Darmor_BZH_scaffold_239p00010 Brassica napus HOM05D003360 ORTHO05D003759 9.3e-07 56.6 71 47.9
C04p65310 Brassica napus HOM05D003360 ORTHO05D003759 9.3e-07 56.6 71 47.9
BraA04t18273Z Brassica rapa HOM05D003360 ORTHO05D003759 9.3e-07 56.6 71 47.9
BraA05t19908Z Brassica rapa HOM05D003360 ORTHO05D003759 9.3e-07 56.6 45 57.8
Nitab4.5_0001437g0150 Nicotiana tabacum HOM05D003360 ORTHO05D003759 9.3e-07 56.6 73 46.6
Os02g0530500 Oryza sativa ssp. japonica HOM05D003360 ORTHO05D003759 9.3e-07 56.6 67 47.8
Sabra10G0185900 Salix brachista HOM05D001901 ORTHO05D001850 9.3e-07 56.6 45 57.8
BcaC01g05667 Brassica carinata HOM05D003360 ORTHO05D003759 1.2e-06 56.2 70 42.9
A03p20030 Brassica napus HOM05D003360 ORTHO05D003759 1.2e-06 56.2 70 42.9
BolC3t14744H Brassica oleracea HOM05D003360 ORTHO05D003759 1.2e-06 56.2 70 42.9
BraA03t11254Z Brassica rapa HOM05D003360 ORTHO05D003759 1.2e-06 56.2 70 42.9
Potri.010G237600 Populus trichocarpa HOM05D003360 ORTHO05D003759 1.2e-06 56.2 47 55.3
Aqoxy4G02806 Aquilegia oxysepala HOM05D003360 ORTHO05D003759 1.6e-06 55.8 43 60.5
BolC4t28009H Brassica oleracea HOM05D003360 ORTHO05D003759 1.6e-06 55.8 71 46.5
Glyma.03G194300 Glycine max HOM05D003360 ORTHO05D003759 1.6e-06 55.8 45 55.6
Potri.008G021766 Populus trichocarpa HOM05D003360 ORTHO05D003759 2.1e-06 55.5 47 53.2
Solyc11g007100.1 Solanum lycopersicum HOM05D003360 ORTHO05D003759 2.1e-06 55.5 73 45.2
Sopen11g003020 Solanum pennellii HOM05D003360 ORTHO05D003759 2.1e-06 55.5 73 45.2
TAR636G1359 Trochodendron aralioides HOM05D003360 ORTHO05D003759 2.1e-06 55.5 47 48.9
Zm00001eb421890 Zea mays HOM05D003360 ORTHO05D003759 2.1e-06 55.5 70 45.7
Gohir.D12G091360 Gossypium hirsutum HOM05D003360 ORTHO05D003759 2.7e-06 55.1 56 55.4
Gorai.008G098900 Gossypium raimondii HOM05D003360 ORTHO05D003759 2.7e-06 55.1 56 55.4
Lsat_1_v5_gn_2_104661 Lactuca sativa HOM05D001901 ORTHO05D001850 3.5e-06 54.7 73 43.8
Aa31LG5G21450 Aethionema arabicum HOM05D003360 ORTHO05D003759 4.6e-06 54.3 45 57.8
ECA238G0205 Erigeron canadensis HOM05D003360 ORTHO05D003759 4.6e-06 54.3 65 46.2
Gohir.D01G196550 Gossypium hirsutum HOM05D003360 ORTHO05D003759 4.6e-06 54.3 45 55.6
Gorai.002G240800 Gossypium raimondii HOM05D003360 ORTHO05D003759 4.6e-06 54.3 45 55.6
Solyc01g005180.1 Solanum lycopersicum HOM05D017667 ORTHO05D020310 4.6e-06 54.3 47 61.7
Sopen01g001210 Solanum pennellii HOM05D017667 ORTHO05D020310 4.6e-06 54.3 47 61.7
PGSC0003DMG400022794 Solanum tuberosum HOM05D017667 ORTHO05D020310 4.6e-06 54.3 47 61.7
Gohir.A12G092744 Gossypium hirsutum HOM05D003360 ORTHO05D003759 6.0e-06 53.9 45 62.2
Hma1.2p1_0232F.1_g097830 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 6.0e-06 53.9 45 57.8
C03p23480 Brassica napus HOM05D003360 ORTHO05D003759 7.9e-06 53.5 70 41.4
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 7.9e-06 53.5 45 53.3
Thhalv10017499m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 7.9e-06 53.5 71 45.1
GSVIVG01011278001 Vitis vinifera HOM05D003360 ORTHO05D003759 7.9e-06 53.5 74 41.9


User provided reference genes

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