Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 3.5e-132 474.9 234 100.0
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 7.6e-87 324.3 206 72.8
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.2e-84 317.0 242 64.9
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 4.6e-84 315.1 228 67.1
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.3e-83 312.8 231 67.5
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.5e-82 309.3 230 67.0
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.4e-80 302.8 234 65.0
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 6.9e-80 301.2 231 65.8
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 3.4e-79 298.9 202 68.3
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 3.4e-79 298.9 216 64.8
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.9e-78 295.8 218 65.1
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 8.4e-78 294.3 222 64.4
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 9.3e-77 290.8 232 60.8
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 9.3e-77 290.8 230 62.2
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.7e-76 289.3 201 68.7
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 5.1e-75 285.0 212 63.2
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 5.1e-75 285.0 251 58.6
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 8.7e-75 284.3 224 59.4
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.9e-74 283.1 222 63.1
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.4e-74 281.2 199 64.8
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.3e-73 280.4 212 64.2
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 2.1e-73 279.6 230 59.6
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 6.2e-73 278.1 206 64.1
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 8.1e-73 277.7 222 61.3
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.4e-72 276.9 222 61.3
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.8e-72 276.6 215 62.3
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.4e-72 276.2 217 60.4
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 3.1e-72 275.8 184 67.9
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 9.0e-72 274.2 220 59.5
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.2e-71 273.9 217 62.2
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 2.0e-71 273.1 219 61.2
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 2.0e-71 273.1 222 60.8
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 4.5e-71 271.9 218 59.6
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 5.8e-71 271.6 210 62.9
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 7.6e-71 271.2 218 59.6
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 4.9e-70 268.5 220 59.5
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 4.9e-70 268.5 223 57.8
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 6.4e-70 268.1 210 62.4
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.4e-69 266.9 210 62.4
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 2.4e-69 266.2 213 61.5
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 5.5e-69 265.0 222 58.6
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 7.1e-69 264.6 221 60.6
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 7.1e-69 264.6 213 59.2
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 9.3e-69 264.2 212 62.3
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.1e-68 263.1 212 57.5
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 2.7e-68 262.7 217 59.0
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 6.0e-68 261.5 221 57.5
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.0e-67 260.8 222 60.4
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 3.0e-67 259.2 194 61.3
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 5.1e-67 258.5 223 58.7
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 8.7e-67 257.7 215 57.2
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.1e-66 257.3 212 59.4
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.9e-66 256.5 204 60.3
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 2.5e-66 256.1 215 56.7
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 4.3e-66 255.4 259 51.0
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 5.6e-66 255.0 215 57.2
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 7.4e-66 254.6 192 61.5
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.6e-65 253.4 207 60.9
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.8e-65 252.7 218 59.6
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 3.7e-65 252.3 215 57.2
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 8.1e-65 251.1 196 60.7
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 8.1e-65 251.1 208 61.1
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.4e-64 250.4 219 54.3
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 2.4e-64 249.6 212 53.8
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 3.1e-64 249.2 214 58.4
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 5.3e-64 248.4 208 58.7
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 5.3e-64 248.4 220 55.5
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.5e-63 246.9 215 56.3
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 2.6e-63 246.1 218 54.6
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.6e-63 246.1 195 62.1
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 7.6e-63 244.6 220 55.0
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 7.6e-63 244.6 190 57.4
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.3e-62 243.8 212 58.5
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.7e-62 243.4 206 58.7
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.2e-62 243.0 195 58.5
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.2e-62 243.0 223 55.2
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 4.9e-62 241.9 220 55.0
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 6.5e-62 241.5 212 58.0
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.9e-61 240.0 206 58.3
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.9e-61 240.0 206 58.3
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 3.2e-61 239.2 161 69.6
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.2e-61 239.2 224 55.4
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.5e-61 238.4 208 57.7
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 5.5e-61 238.4 185 62.2
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.3e-61 237.7 240 54.2
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.6e-60 236.9 223 51.6
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.7e-60 236.1 206 55.8
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.7e-60 236.1 212 54.7
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 2.7e-60 236.1 229 54.1
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.7e-60 236.1 229 54.1
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 4.6e-60 235.3 206 58.3
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 4.6e-60 235.3 195 56.4
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 4.6e-60 235.3 195 59.0
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 4.6e-60 235.3 216 53.7
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 6.0e-60 235.0 206 58.3
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.8e-59 233.4 229 54.1
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.8e-59 233.4 227 53.7
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 2.3e-59 233.0 207 58.0
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 2.3e-59 233.0 215 53.5
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.0e-59 232.6 142 73.9
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.0e-59 232.6 209 52.6
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 3.9e-59 232.3 224 54.0
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.9e-59 232.3 224 53.6
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.9e-59 232.3 215 53.5
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 5.1e-59 231.9 233 53.6
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 6.7e-59 231.5 206 57.8
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.1e-58 230.7 240 52.9
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.9e-58 229.9 206 56.3
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 2.5e-58 229.6 229 52.8
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-57 226.9 207 57.0
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.7e-57 225.7 190 57.9
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.7e-57 225.7 210 54.3
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.7e-57 225.7 229 52.8
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 4.8e-57 225.3 211 54.0
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 8.2e-57 224.6 222 56.8
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.4e-56 223.8 196 55.6
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 2.4e-56 223.0 232 51.7
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 5.3e-56 221.9 214 53.3
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 5.3e-56 221.9 215 55.8
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 2.6e-55 219.5 211 55.5
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 2.6e-55 219.5 199 53.8
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 2.9e-54 216.1 224 52.2
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 5.5e-53 211.8 195 49.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.8e-51 206.8 191 50.3
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 8.7e-51 204.5 207 45.9
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.1e-50 204.1 184 54.9
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.9e-50 203.4 146 63.7
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 5.7e-50 201.8 192 49.5
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 7.4e-50 201.4 262 41.2
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.3e-49 198.4 214 48.1
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 8.2e-49 198.0 190 51.6
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 8.2e-49 198.0 216 47.2
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-48 197.6 190 51.6
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.4e-48 197.2 194 51.5
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.3e-48 195.3 214 46.7
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.5e-47 193.7 216 48.6
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.6e-47 193.0 185 49.2
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.7e-46 190.3 206 47.6
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 2.2e-46 189.9 212 46.7
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.0e-46 188.7 214 46.3
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 6.5e-46 188.3 203 49.8
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 8.5e-46 188.0 201 51.2
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.9e-45 186.8 203 49.3
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 2.5e-45 186.4 200 48.0
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.2e-44 184.1 223 43.9
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.2e-44 184.1 223 43.9
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.6e-44 183.7 207 48.8
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 6.1e-44 181.8 208 46.2
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 2.3e-43 179.9 208 45.7
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 1.3e-41 174.1 212 44.3
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.2e-39 167.5 211 43.1
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 6.5e-38 161.8 137 54.7
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.4e-37 160.6 254 37.8
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.3e-34 149.4 136 52.9
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-32 144.4 159 47.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 7.2e-29 131.7 138 46.4
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 9.4e-29 131.3 200 39.5
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 6.1e-28 128.6 201 39.8
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.0e-27 127.9 173 40.5
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.8e-25 119.8 142 45.1
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.1e-24 117.9 142 43.0
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 9.1e-24 114.8 141 45.4
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 8.0e-20 101.7 104 48.1
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.8e-17 92.4 151 35.1
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.1e-16 89.4 69 60.9
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 7.7e-15 85.1 78 57.7
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.0e-14 84.7 71 57.7
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.0e-14 84.7 58 65.5
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.2e-10 71.2 67 53.7
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 3.4e-10 69.7 53 60.4
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-09 67.8 109 34.9
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 1.7e-09 67.4 52 57.7
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 8.3e-09 65.1 53 56.6
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-08 64.3 109 33.9
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.5e-07 59.7 67 41.8
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.0e-06 58.2 72 44.4
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.0e-06 58.2 75 46.7
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 2.3e-06 57.0 79 49.4
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 6.6e-06 55.5 75 45.3


User provided reference genes

Program Settings