Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.9e-101 372.5 187 100.0
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.3e-52 210.3 187 63.6
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.2e-50 203.8 188 62.8
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 4.2e-48 195.3 191 62.3
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.7e-47 192.6 208 56.7
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 3.6e-47 192.2 177 57.6
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.6e-47 192.2 180 59.4
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.6e-47 192.2 180 59.4
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 4.7e-47 191.8 195 58.5
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 5.7e-45 184.9 207 53.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 9.8e-45 184.1 193 57.5
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.2e-44 183.0 190 57.9
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.4e-43 180.3 186 57.0
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 4.1e-43 178.7 186 54.8
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 7.0e-43 177.9 180 56.1
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 9.1e-43 177.6 186 56.5
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.0e-42 176.4 182 54.4
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 4.5e-42 175.3 186 54.8
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 5.9e-42 174.9 162 58.6
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.0e-41 174.1 193 53.4
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.9e-41 172.6 185 54.6
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.9e-41 172.6 185 55.1
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 6.6e-41 171.4 190 51.6
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 8.6e-41 171.0 189 52.9
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.9e-40 169.9 186 51.1
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.6e-40 168.3 184 53.8
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.2e-39 167.2 198 54.0
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.6e-39 166.8 186 52.2
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.6e-39 166.8 184 50.5
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.1e-39 166.4 182 52.7
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.1e-39 166.4 178 53.4
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.1e-39 166.4 178 53.4
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.1e-39 166.4 181 53.6
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.8e-39 166.0 204 48.0
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.6e-39 165.6 175 52.6
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.6e-39 165.6 181 51.9
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.6e-39 165.6 186 52.2
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 3.6e-39 165.6 191 50.3
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.6e-39 165.6 184 54.3
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 4.7e-39 165.2 147 57.1
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 4.7e-39 165.2 196 50.0
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.7e-39 165.2 178 53.4
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 6.1e-39 164.9 175 52.0
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 6.1e-39 164.9 177 53.1
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 6.1e-39 164.9 185 53.5
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 8.0e-39 164.5 175 52.0
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.0e-38 164.1 194 50.0
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.0e-38 164.1 175 50.9
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.4e-38 163.7 175 50.9
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.4e-38 163.7 175 49.1
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.4e-38 163.7 183 53.0
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.4e-38 163.7 183 53.0
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.4e-38 163.7 184 51.1
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.8e-38 163.3 189 51.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.8e-38 163.3 177 52.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 2.3e-38 162.9 175 51.4
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 2.3e-38 162.9 175 52.6
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.3e-38 162.9 189 51.9
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.0e-38 162.5 175 49.1
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 4.0e-38 162.2 193 49.2
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 4.0e-38 162.2 191 49.7
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.0e-38 162.2 181 51.9
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 5.2e-38 161.8 186 52.7
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 5.2e-38 161.8 191 52.9
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.2e-37 160.6 177 53.7
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.5e-37 160.2 193 48.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.0e-37 159.8 152 56.6
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.0e-37 159.8 194 47.9
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 2.0e-37 159.8 173 50.9
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.0e-37 159.8 172 52.3
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.0e-37 159.8 186 47.8
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.6e-37 159.5 177 53.7
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 2.6e-37 159.5 176 52.3
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.6e-37 159.5 191 52.4
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.6e-37 159.5 159 54.1
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 3.4e-37 159.1 175 49.1
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.4e-37 159.1 184 54.3
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 7.5e-37 157.9 187 49.2
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.8e-37 157.5 180 51.1
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.7e-36 156.8 175 49.7
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.7e-36 156.8 205 47.8
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.2e-36 156.4 179 50.8
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.2e-36 156.4 179 50.8
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.2e-36 156.4 188 50.0
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.9e-36 156.0 191 48.7
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.9e-36 156.0 187 50.3
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 2.9e-36 156.0 186 50.5
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.9e-36 156.0 127 62.2
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.9e-36 156.0 190 51.6
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.9e-36 156.0 198 48.0
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.9e-36 156.0 202 45.5
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 4.9e-36 155.2 199 46.7
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.4e-36 154.8 131 61.8
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 8.3e-36 154.5 175 49.1
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 8.3e-36 154.5 175 49.1
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.1e-35 154.1 186 51.1
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.4e-35 153.7 207 45.4
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.8e-35 153.3 197 46.2
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.8e-35 153.3 194 46.9
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 7.0e-35 151.4 186 50.5
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-34 150.6 137 56.9
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.2e-34 150.6 138 55.8
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.6e-34 150.2 178 47.8
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 4.6e-34 148.7 190 50.0
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 5.9e-34 148.3 149 51.7
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 7.8e-34 147.9 184 48.9
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.3e-33 147.1 184 48.4
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 3.3e-32 142.5 128 57.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.3e-32 142.1 117 63.2
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 7.3e-32 141.4 153 51.0
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.1e-31 139.8 121 63.6
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.0e-30 137.5 176 47.7
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.8e-30 136.7 194 42.8
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.1e-30 136.0 186 45.2
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 6.8e-30 134.8 192 45.8
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.2e-28 129.8 153 46.4
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.2e-28 129.8 160 46.9
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 8.3e-28 127.9 194 44.8
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.1e-27 127.5 92 64.1
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.9e-27 126.7 194 43.3
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.4e-27 126.3 197 41.1
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 4.1e-27 125.6 128 50.8
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 5.4e-27 125.2 193 39.9
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.0e-26 123.2 109 56.9
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.0e-25 120.9 135 43.7
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.7e-25 120.2 97 55.7
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.3e-25 119.8 114 57.9
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 3.9e-25 119.0 145 42.8
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.6e-25 118.2 188 39.9
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 3.3e-24 115.9 198 36.9
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 7.3e-24 114.8 186 40.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 4.7e-23 112.1 78 61.5
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 4.7e-23 112.1 99 53.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 8.1e-23 111.3 169 38.5
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 5.2e-22 108.6 90 48.9
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.4e-21 105.5 158 39.9
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.9e-19 100.1 153 40.5
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 3.2e-19 99.4 87 52.9
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 9.2e-19 97.8 136 39.7
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-17 94.0 118 44.9
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.3e-17 93.2 101 53.5
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.3e-17 93.2 120 40.0
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.0e-17 92.8 101 53.5
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.0e-17 92.8 118 44.1
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.9e-17 92.4 99 49.5
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 9.5e-16 87.8 100 53.0
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 9.5e-16 87.8 178 41.6
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 8.1e-15 84.7 122 44.3
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.2e-13 80.9 81 44.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 3.4e-13 79.3 79 65.8
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.7e-12 77.0 99 43.4
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 5.6e-08 62.0 32 75.0
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 3.6e-07 59.3 103 41.7
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 6.2e-07 58.5 96 43.8


User provided reference genes

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