Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 7.6e-36 153.3 77 100.0
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 2.4e-29 131.7 77 85.7
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 2.2e-27 125.2 77 79.2
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 2.5e-26 121.7 80 78.8
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 4.2e-26 120.9 74 82.4
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 1.2e-25 119.4 74 82.4
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 1.3e-24 115.9 71 81.7
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.8e-24 115.5 71 81.7
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 2.3e-24 115.2 75 74.7
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 3.9e-24 114.4 71 80.3
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 3.9e-24 114.4 71 80.3
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.1e-24 114.0 75 80.0
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 5.1e-24 114.0 84 72.6
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 6.7e-24 113.6 72 75.0
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 8.7e-24 113.2 71 78.9
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 1.1e-23 112.8 71 78.9
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 1.5e-23 112.5 74 75.7
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 3.3e-23 111.3 65 81.5
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 4.3e-23 110.9 73 76.7
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 4.3e-23 110.9 65 81.5
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 4.3e-23 110.9 75 74.7
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 4.3e-23 110.9 77 76.6
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 9.6e-23 109.8 69 82.6
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 1.6e-22 109.0 78 73.1
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 2.1e-22 108.6 69 81.2
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 2.8e-22 108.2 75 77.3
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 2.8e-22 108.2 63 81.0
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 4.8e-22 107.5 71 76.1
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 6.3e-22 107.1 75 74.7
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 8.2e-22 106.7 75 73.3
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 8.2e-22 106.7 75 73.3
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 8.2e-22 106.7 68 77.9
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 1.1e-21 106.3 73 69.9
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 2.4e-21 105.1 67 76.1
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 9.0e-21 103.2 63 81.0
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 1.2e-20 102.8 69 71.0
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 1.5e-20 102.4 65 80.0
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.5e-20 102.4 77 67.5
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.0e-20 102.1 78 67.9
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 2.6e-20 101.7 79 68.4
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 2.6e-20 101.7 61 77.0
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 2.6e-20 101.7 69 69.6
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 1.3e-19 99.4 62 80.6
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 1.3e-19 99.4 62 80.6
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 1.3e-19 99.4 64 76.6
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 1.7e-19 99.0 73 69.9
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 2.9e-19 98.2 71 74.6
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 3.8e-19 97.8 74 67.6
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 3.8e-19 97.8 73 69.9
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 3.8e-19 97.8 79 63.3
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 5.0e-19 97.4 68 73.5
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 6.5e-19 97.1 72 68.1
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 6.5e-19 97.1 73 68.5
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 8.5e-19 96.7 71 69.0
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 1.1e-18 96.3 65 73.8
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.1e-18 96.3 65 78.5
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.1e-18 96.3 65 78.5
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 1.9e-18 95.5 65 73.8
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 2.5e-18 95.1 63 73.0
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 3.2e-18 94.7 68 72.1
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 3.2e-18 94.7 57 80.7
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 4.2e-18 94.4 61 73.8
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 5.5e-18 94.0 64 75.0
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.2e-17 92.8 69 68.1
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 2.1e-17 92.0 57 75.4
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 3.6e-17 91.3 68 72.1
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 3.6e-17 91.3 68 72.1
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 3.6e-17 91.3 68 72.1
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 4.6e-17 90.9 64 70.3
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 6.1e-17 90.5 68 72.1
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 6.1e-17 90.5 64 75.0
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 6.1e-17 90.5 75 66.7
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 7.9e-17 90.1 52 84.6
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 7.9e-17 90.1 65 72.3
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 7.9e-17 90.1 69 68.1
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 1.0e-16 89.7 67 71.6
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 1.3e-16 89.4 67 67.2
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.8e-16 89.0 63 66.7
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.8e-16 89.0 63 66.7
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 1.8e-16 89.0 63 63.5
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 1.8e-16 89.0 63 65.1
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 2.3e-16 88.6 53 79.2
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 3.9e-16 87.8 65 69.2
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 6.7e-16 87.0 65 69.2
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 6.7e-16 87.0 63 65.1
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 8.7e-16 86.7 60 73.3
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.1e-15 86.3 53 81.1
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 1.1e-15 86.3 60 68.3
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.9e-15 85.5 59 67.8
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 2.5e-15 85.1 65 69.2
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 4.3e-15 84.3 66 63.6
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 4.3e-15 84.3 67 64.2
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 5.7e-15 84.0 69 65.2
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 2.2e-14 82.0 63 68.3
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 2.2e-14 82.0 53 73.6
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 4.8e-14 80.9 52 75.0
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 1.1e-13 79.7 67 62.7
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 1.4e-13 79.3 63 58.7
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 4.5e-12 74.3 78 51.3
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.4e-10 69.3 43 79.1
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 3.2e-10 68.2 45 71.1
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 8.8e-08 60.1 38 68.4
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 5.7e-07 57.4 53 52.8


User provided reference genes

Program Settings