Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 6.1e-103 377.5 189 100.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.8e-94 349.4 187 92.5
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.9e-88 329.3 193 88.1
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 3.2e-88 328.6 190 86.8
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 4.2e-88 328.2 190 86.8
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.6e-87 325.1 189 84.1
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.8e-86 322.8 194 85.1
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.8e-86 322.8 193 83.9
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 2.3e-86 322.4 194 84.5
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 5.2e-86 321.2 193 83.4
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 8.8e-86 320.5 194 84.5
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.5e-85 319.7 193 84.5
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 83.5
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.0e-85 319.3 195 82.6
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 2.6e-85 318.9 193 83.4
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.6e-85 318.9 197 80.7
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.6e-85 318.9 189 83.6
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 3.4e-85 318.5 189 81.5
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.3e-84 316.6 189 82.0
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.3e-84 316.6 189 83.1
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.7e-84 316.2 190 82.6
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.7e-84 316.2 194 80.9
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.2e-84 315.8 189 81.0
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.2e-84 315.8 189 82.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.8e-84 315.5 189 81.0
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 2.8e-84 315.5 193 81.9
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 8.3e-84 313.9 193 82.4
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 8.3e-84 313.9 197 79.7
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 8.3e-84 313.9 238 71.0
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.1e-83 313.5 195 82.6
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.4e-83 312.4 188 85.6
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 3.1e-83 312.0 191 82.2
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 7.0e-83 310.8 191 81.7
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.0e-83 310.8 190 82.6
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.0e-83 310.8 189 82.0
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.0e-83 310.8 189 81.0
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 9.1e-83 310.5 194 80.4
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 9.1e-83 310.5 193 81.9
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 9.1e-83 310.5 189 80.4
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.2e-82 310.1 189 82.5
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.6e-82 309.7 191 80.6
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.7e-82 308.9 193 81.9
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.7e-82 308.9 189 81.0
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.7e-82 308.9 189 81.0
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.5e-82 308.5 194 80.4
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.5e-82 308.5 194 80.4
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.5e-82 308.5 189 81.0
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 7.7e-82 307.4 194 79.9
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.7e-81 306.2 191 79.1
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.7e-81 306.2 198 77.8
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.3e-81 305.8 192 81.2
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.3e-81 305.8 192 81.8
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.3e-81 305.8 198 78.8
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.8e-81 305.1 193 80.3
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 6.6e-81 304.3 192 80.7
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 8.6e-81 303.9 194 77.8
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 8.6e-81 303.9 196 78.6
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.1e-80 303.5 192 80.2
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-80 303.1 195 77.9
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.5e-80 303.1 199 76.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.5e-80 302.4 192 77.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 4.2e-80 301.6 192 79.7
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 4.2e-80 301.6 194 79.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.5e-80 301.2 202 77.2
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 7.2e-80 300.8 199 75.9
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 9.5e-80 300.4 198 77.3
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.2e-79 300.1 194 78.4
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.2e-79 300.1 194 77.3
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.2e-79 300.1 201 75.1
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.6e-79 299.7 197 76.1
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.6e-79 299.7 206 75.7
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.6e-79 299.7 194 78.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.6e-79 299.7 197 76.6
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 2.1e-79 299.3 195 76.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 2.1e-79 299.3 195 76.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.1e-79 299.3 197 75.6
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.1e-79 299.3 202 74.8
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.1e-79 299.3 202 74.8
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 3.6e-79 298.5 212 71.2
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 4.7e-79 298.1 199 75.9
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.7e-79 298.1 199 74.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 8.0e-79 297.4 194 76.8
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.8e-78 296.2 203 73.4
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.8e-78 296.2 200 75.0
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.0e-78 295.4 200 75.0
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.0e-78 295.4 205 73.2
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 4.0e-78 295.0 196 76.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.0e-78 295.0 196 77.0
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.0e-78 295.0 204 73.0
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 5.2e-78 294.7 197 75.1
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.2e-78 294.7 200 74.5
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.2e-78 294.7 200 74.5
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 8.9e-78 293.9 197 75.1
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 8.9e-78 293.9 198 74.2
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 8.9e-78 293.9 199 72.4
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 8.9e-78 293.9 198 78.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.5e-77 293.1 204 76.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.6e-77 292.4 197 74.6
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.6e-77 292.4 197 74.6
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 7.5e-77 290.8 197 74.1
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.8e-77 290.4 201 72.6
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 9.8e-77 290.4 194 76.8
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.2e-76 289.3 191 77.0
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.8e-76 288.9 194 76.3
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 4.9e-76 288.1 196 75.0
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 6.3e-76 287.7 198 72.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 6.3e-76 287.7 205 72.2
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.8e-75 286.2 201 72.6
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.1e-75 285.4 171 82.5
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 3.1e-75 285.4 211 73.5
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.2e-74 283.5 196 73.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.0e-74 282.7 200 71.0
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 2.0e-74 282.7 203 72.9
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 2.7e-74 282.3 200 71.0
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.7e-74 282.3 192 74.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.3e-73 280.0 195 74.4
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 3.8e-73 278.5 196 71.9
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 6.6e-73 277.7 193 71.5
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.9e-72 276.2 212 69.3
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.3e-72 275.4 186 74.7
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.3e-72 275.4 174 81.0
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 5.6e-72 274.6 198 72.2
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 9.5e-72 273.9 199 70.4
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.1e-71 272.7 175 78.9
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.0e-70 270.4 192 69.8
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 2.0e-69 266.2 184 71.7
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.6e-69 265.8 181 76.2
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.6e-69 265.8 192 70.3
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.4e-69 265.4 187 72.7
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 9.8e-69 263.8 179 72.1
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.3e-68 263.5 223 62.8
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.9e-68 262.3 182 72.0
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 6.4e-68 261.2 201 68.2
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.1e-67 260.4 192 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 8.6e-65 250.8 174 68.4
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 4.3e-64 248.4 233 60.1
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.1e-62 243.8 187 69.0
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.4e-62 243.4 213 62.0
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 4.4e-61 238.4 198 61.1
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.3e-60 236.9 189 64.6
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.4e-59 232.6 182 67.0
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 9.2e-59 230.7 177 66.7
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 8.6e-57 224.2 201 62.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.1e-51 207.2 153 71.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.2e-47 193.7 132 77.3
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.6e-47 193.4 117 80.3
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 7.1e-43 177.9 172 58.7
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.5e-40 170.2 104 88.5
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 4.3e-40 168.7 98 87.8
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.8e-38 163.3 100 85.0
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 1.1e-35 154.1 188 53.7
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.2e-35 152.5 98 76.5
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 5.8e-29 131.7 95 71.6
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 7.6e-29 131.3 73 82.2
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.3e-28 130.6 190 45.3
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.8e-28 129.0 70 90.0
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 7.1e-27 124.8 75 73.3
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.6e-26 123.6 112 59.8
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.0e-25 120.9 192 39.6
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 3.1e-22 109.4 185 40.0
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-21 107.1 100 63.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 7.6e-21 104.8 187 41.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.2e-19 99.4 187 40.1
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.3e-15 87.4 71 66.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 2.8e-15 86.3 71 57.7
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.0e-14 82.4 51 82.4
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 5.3e-14 82.0 52 67.3
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.9e-14 81.6 53 79.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.6e-13 79.7 61 60.7
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 3.4e-13 79.3 162 34.6
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 6.7e-09 65.1 70 52.9
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-08 63.9 55 54.5


User provided reference genes

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