Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 1.9e-245 852.0 428 100.0
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 3.6e-212 741.5 428 85.7
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 3.6e-212 741.5 428 85.7
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 1.0e-206 723.4 427 84.1
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 1.4e-200 703.0 454 78.4
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 2.4e-195 685.6 435 79.8
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 1.2e-191 673.3 437 78.0
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 6.0e-191 671.0 428 79.4
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.5e-189 666.4 438 77.6
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 4.3e-189 664.8 435 77.7
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 8.2e-188 660.6 430 77.0
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 1.1e-187 660.2 426 77.2
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.1e-187 660.2 428 78.5
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 9.0e-187 657.1 435 76.6
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.2e-186 656.8 428 77.6
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 1.2e-186 656.8 428 78.0
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 2.0e-186 656.0 438 75.1
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 3.4e-186 655.2 438 74.7
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 4.5e-186 654.8 429 77.6
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 1.0e-185 653.7 454 73.8
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.0e-185 653.7 466 73.0
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 1.7e-185 652.9 430 77.4
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 2.2e-185 652.5 426 77.7
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 2.2e-185 652.5 441 76.4
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 2.2e-185 652.5 432 76.2
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 3.8e-185 651.7 436 75.0
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 3.8e-185 651.7 426 77.5
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 6.5e-185 651.0 431 75.9
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 6.5e-185 651.0 424 76.9
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 8.4e-185 650.6 428 76.9
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 7.1e-184 647.5 433 75.3
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 7.1e-184 647.5 436 75.2
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 1.6e-183 646.4 453 72.4
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 4.6e-183 644.8 435 75.9
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.0e-182 643.7 435 74.5
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 1.3e-182 643.3 409 79.2
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 3.0e-182 642.1 426 75.6
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 3.0e-182 642.1 426 75.8
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 3.0e-182 642.1 432 73.8
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 3.9e-182 641.7 376 83.5
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 6.7e-182 641.0 438 76.0
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 6.7e-182 641.0 426 75.6
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 8.7e-182 640.6 444 74.8
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 8.7e-182 640.6 433 75.1
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 8.7e-182 640.6 434 73.3
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 8.7e-182 640.6 426 75.4
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 8.7e-182 640.6 438 74.4
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 1.1e-181 640.2 367 84.7
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.5e-181 639.8 376 83.0
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.9e-181 639.4 438 74.9
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 2.5e-181 639.0 426 75.4
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 3.3e-181 638.6 426 76.8
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 1.6e-180 636.3 430 74.9
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 2.8e-180 635.6 368 83.4
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 2.8e-180 635.6 435 74.0
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 8.2e-180 634.0 368 83.7
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 8.2e-180 634.0 438 74.0
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 2.4e-179 632.5 427 74.9
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 3.1e-179 632.1 429 73.9
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 5.3e-179 631.3 432 73.6
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 5.3e-179 631.3 368 83.2
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 6.9e-179 630.9 401 79.3
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 6.9e-179 630.9 426 74.9
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 9.0e-179 630.6 429 74.6
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 1.2e-178 630.2 365 84.7
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 2.6e-178 629.0 426 75.6
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 3.4e-178 628.6 430 73.0
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 3.4e-178 628.6 429 74.4
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 7.7e-178 627.5 435 73.1
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 7.7e-178 627.5 425 74.1
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 1.0e-177 627.1 426 73.5
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.7e-177 626.3 428 73.8
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-177 626.3 371 82.2
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 2.2e-177 625.9 428 74.1
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 3.8e-177 625.2 431 73.1
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 5.0e-177 624.8 432 74.3
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 8.5e-177 624.0 390 78.5
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 1.1e-176 623.6 428 72.9
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 2.5e-176 622.5 377 79.3
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 2.5e-176 622.5 380 79.5
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 3.2e-176 622.1 376 80.3
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 7.2e-176 620.9 397 77.1
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 1.2e-175 620.2 428 73.6
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 1.6e-175 619.8 365 83.0
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 4.6e-175 618.2 438 71.9
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 1.4e-174 616.7 373 81.0
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 1.4e-174 616.7 438 71.2
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 1.8e-174 616.3 368 80.7
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 1.8e-174 616.3 377 79.6
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 5.1e-174 614.8 403 75.9
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 5.1e-174 614.8 403 75.9
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 6.7e-174 614.4 439 71.3
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 6.7e-174 614.4 398 75.9
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 8.8e-174 614.0 428 72.9
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 8.8e-174 614.0 428 72.9
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 2.5e-173 612.5 390 77.4
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 7.4e-173 610.9 390 77.2
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 4.8e-172 608.2 362 81.5
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 1.8e-171 606.3 370 79.7
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 1.8e-171 606.3 370 79.7
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 5.3e-171 604.7 404 76.5
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 5.3e-171 604.7 433 70.9
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 5.3e-171 604.7 491 65.6
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 2.0e-170 602.8 387 77.5
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 3.9e-166 588.6 436 70.9
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 2.0e-165 586.3 437 70.9
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 4.4e-165 585.1 470 67.4
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 3.7e-164 582.0 338 84.6
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 5.3e-163 578.2 428 69.9
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 2.1e-159 566.2 389 74.0
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 3.0e-158 562.4 365 76.7
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 5.0e-153 545.0 381 71.1
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 2.5e-152 542.7 338 78.1
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.2e-151 540.4 360 73.1
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.1e-147 525.4 358 70.7
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 1.8e-139 500.0 424 62.3
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 5.4e-139 498.4 358 68.2
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 5.9e-138 495.0 343 72.0
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 1.3e-137 493.8 507 54.8
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 2.9e-137 492.7 313 78.3
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 1.4e-131 473.8 426 60.1
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 3.3e-128 462.6 346 65.6
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 3.5e-122 442.6 389 57.8
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 6.8e-118 428.3 255 82.4
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.9e-112 410.2 308 67.2
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 2.8e-111 406.4 331 64.0
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.6e-106 390.6 253 77.5
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 1.8e-102 377.1 259 70.7
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 9.2e-99 364.8 258 71.3
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 4.6e-98 362.5 378 53.2
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 2.4e-94 350.1 428 50.2
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.1e-80 304.7 178 80.3
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 3.1e-78 296.6 179 78.8
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 6.0e-74 282.3 170 81.2
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 2.4e-70 270.4 189 72.0
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 4.8e-63 246.1 206 65.0
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 4.8e-63 246.1 206 65.0
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 7.9e-58 228.8 157 73.9
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-52 211.1 152 67.1
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 2.5e-51 207.2 124 75.8
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.3e-47 194.9 128 72.7
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.5e-45 188.0 175 58.3
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 5.3e-38 162.9 106 75.5
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 5.9e-37 159.5 375 32.3
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 9.4e-35 152.1 182 52.2
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 2.8e-31 140.6 135 54.1
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 1.1e-30 138.7 93 73.1
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 1.3e-28 131.7 77 80.5
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 3.8e-28 130.2 168 47.0
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.1e-27 128.6 147 49.0
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 4.7e-26 123.2 113 57.5
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 1.9e-19 101.3 69 71.0
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 1.8e-14 84.7 50 82.0
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 9.2e-14 82.4 444 25.0
Lsat_1_v5_gn_7_11140 Lactuca sativa HOM05D002771 ORTHO05D003078 9.5e-11 72.4 231 28.6
Pp3s46_180 Physcomitrium patens HOM05D002465 ORTHO05D028651 2.1e-10 71.2 246 26.0
Haze_27183 Corylus avellana HOM05D003605 ORTHO05D004292 3.6e-10 70.5 352 23.6
FAN26G2714 Fragaria x ananassa HOM05D003605 ORTHO05D004292 4.7e-10 70.1 300 25.7
Lalb_Chr21g0309431 Lupinus albus HOM05D002771 ORTHO05D003078 4.7e-10 70.1 257 24.9
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 8.0e-10 69.3 262 28.6
RcHm_v2.0_Chr2g0115381 Rosa chinensis HOM05D003605 ORTHO05D004292 8.0e-10 69.3 309 25.6
DCAR_012361 Daucus carota HOM05D002771 ORTHO05D003078 1.4e-09 68.6 234 25.2
FvH4_1g21500 Fragaria vesca HOM05D003605 ORTHO05D004292 1.8e-09 68.2 287 26.1
FAN19G1223 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.8e-09 68.2 287 26.1
VMungo1309G1294 Vigna mungo HOM05D002771 ORTHO05D003078 5.2e-09 66.6 237 26.6
Eucgr.I00395 Eucalyptus grandis HOM05D003605 ORTHO05D004292 8.9e-09 65.9 306 26.5
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 8.9e-09 65.9 190 28.9
Cpa.g.sc36.33 Carica papaya HOM05D002771 ORTHO05D003078 2.0e-08 64.7 251 23.1
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 4.4e-08 63.5 34 76.5
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 2.2e-07 61.2 163 25.8
FAN23G2759 Fragaria x ananassa HOM05D003605 ORTHO05D004292 4.9e-07 60.1 193 29.0
ECA236G0232 Erigeron canadensis HOM05D002771 ORTHO05D003078 6.4e-07 59.7 267 25.5
arahy.Tifrunner.gnm1.ann1.HZ04KR Arachis hypogaea HOM05D000658 ORTHO05D000826 1.1e-06 58.9 307 24.1
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 1.1e-06 58.9 360 22.2
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 1.4e-06 58.5 29 82.8
PGSC0003DMG400021651 Solanum tuberosum HOM05D000418 ORTHO05D000317 1.9e-06 58.2 164 26.8
HanXRQChr06g0167801 Helianthus annuus HOM05D002771 ORTHO05D003078 4.1e-06 57.0 266 21.8
PGSC0003DMG402011506 Solanum tuberosum HOM05D000200 ORTHO05D017741 5.4e-06 56.6 54 55.6
CAN.G933.13 Capsicum annuum HOM05D002015 ORTHO05D017741 9.2e-06 55.8 57 49.1


User provided reference genes

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