Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 5.5e-278 960.3 476 100.0
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 7.2e-201 704.1 476 73.5
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 9.3e-201 703.7 476 72.9
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.0e-194 683.7 471 70.5
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 6.5e-194 681.0 473 69.6
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.4e-193 679.9 473 69.8
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.0e-191 672.2 469 69.7
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 8.8e-191 670.6 472 69.3
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 7.4e-190 667.5 472 68.9
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.8e-189 665.6 469 68.7
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 3.4e-187 658.7 472 68.0
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 3.2e-185 652.1 476 66.4
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.7e-184 649.0 472 66.7
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 2.7e-184 649.0 470 68.5
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 6.1e-184 647.9 469 67.0
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 2.3e-183 646.0 472 68.0
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 8.8e-183 644.0 424 72.6
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 4.4e-182 641.7 476 66.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 5.7e-182 641.3 453 68.2
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 3.7e-181 638.6 467 66.6
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.7e-181 638.6 474 65.0
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.8e-181 638.3 474 65.8
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.8e-180 636.3 470 66.0
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.4e-180 636.0 472 66.3
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 3.1e-180 635.6 473 66.0
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.6e-179 632.5 475 65.7
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 4.5e-179 631.7 475 64.6
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 7.7e-179 630.9 474 66.0
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.3e-178 630.2 470 64.5
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.3e-178 630.2 474 64.6
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 2.9e-178 629.0 471 66.2
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.2e-177 625.2 441 68.0
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 5.5e-177 624.8 477 64.8
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.5e-177 624.8 469 64.4
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.4e-175 620.2 458 65.3
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 5.7e-174 614.8 474 62.9
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 9.7e-174 614.0 470 63.8
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.1e-172 610.5 469 62.7
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.8e-172 609.8 489 62.2
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 5.3e-172 608.2 474 62.2
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 5.0e-170 601.7 470 61.7
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 6.5e-170 601.3 472 63.6
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.1e-169 600.5 418 69.6
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.5e-169 600.1 476 63.2
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.5e-169 599.4 470 63.4
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 5.5e-169 598.2 473 61.9
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 7.2e-169 597.8 476 63.0
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 9.4e-169 597.4 474 60.8
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.2e-168 597.0 474 61.2
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.2e-168 597.0 474 61.4
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.6e-168 596.7 473 61.7
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.1e-168 596.3 473 61.7
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 2.1e-168 596.3 476 60.9
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 3.6e-168 595.5 476 60.9
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.0e-168 594.3 473 61.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.0e-167 594.0 474 60.5
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 5.2e-167 591.7 454 64.1
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 8.8e-167 590.9 474 60.1
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.2e-166 590.5 470 62.8
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-166 589.7 475 61.1
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 4.4e-166 588.6 475 61.3
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 5.7e-166 588.2 475 60.8
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.3e-165 587.0 474 60.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.8e-165 585.9 472 61.7
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 6.3e-165 584.7 475 59.4
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 6.3e-165 584.7 445 63.8
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 8.3e-165 584.3 475 60.4
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 8.3e-165 584.3 475 60.4
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 8.3e-165 584.3 474 61.8
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.8e-164 583.2 477 60.8
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.4e-164 582.8 477 60.4
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 7.0e-164 581.3 475 58.9
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 9.1e-164 580.9 475 60.2
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 9.1e-164 580.9 474 59.9
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.0e-163 579.7 475 60.4
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 4.5e-163 578.6 473 59.6
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 4.5e-163 578.6 475 59.2
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.0e-162 577.4 474 59.7
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 8.5e-162 574.3 473 59.4
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.5e-161 573.5 441 65.3
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.2e-161 572.4 473 59.6
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 2.1e-160 569.7 474 58.4
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.8e-159 566.6 465 58.7
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 7.5e-158 561.2 515 58.1
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 2.8e-157 559.3 465 57.2
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 4.9e-157 558.5 465 57.4
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 8.3e-157 557.8 474 57.6
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.8e-156 556.6 473 58.4
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 3.1e-156 555.8 469 58.4
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 4.1e-156 555.4 465 57.0
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 4.1e-156 555.4 465 57.6
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 5.4e-156 555.1 474 57.8
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 7.7e-155 551.2 465 57.8
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-154 550.8 475 57.7
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 5.0e-154 548.5 465 57.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 8.9e-151 537.7 441 58.0
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 6.4e-149 531.6 436 58.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 8.3e-149 531.2 475 55.8
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-147 526.9 449 57.5
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 4.6e-147 525.4 473 53.3
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.3e-146 523.9 470 56.2
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 9.5e-145 517.7 444 57.7
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 2.8e-144 516.2 443 56.4
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.6e-144 515.8 475 54.1
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.8e-143 513.5 343 70.6
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.7e-141 505.8 452 57.5
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 8.3e-141 504.6 490 53.3
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 3.9e-138 495.7 490 54.3
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 8.6e-138 494.6 475 55.2
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 1.1e-137 494.2 470 53.6
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 5.6e-137 491.9 465 50.5
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 4.0e-135 485.7 476 51.5
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-133 479.6 394 59.1
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-132 477.2 499 51.7
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.5e-129 467.2 431 55.9
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.8e-128 463.0 370 59.7
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 3.1e-127 459.5 474 54.0
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 3.8e-125 452.6 441 54.9
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-123 447.6 453 54.1
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 3.1e-119 433.0 359 59.9
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 7.6e-110 401.7 509 45.2
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 7.6e-102 375.2 469 45.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 4.2e-84 316.2 253 63.6
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.0e-82 311.6 410 41.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.3e-77 294.7 438 38.6
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.1e-73 281.6 197 70.1
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 2.0e-73 280.8 197 70.1
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.3e-71 272.7 190 67.9
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 8.8e-66 255.4 278 47.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.0e-62 244.2 232 55.2
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.7e-61 241.1 203 60.6
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.4e-55 221.5 145 69.0
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 8.0e-51 205.7 225 49.3
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 4.0e-50 203.4 390 36.2
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 3.7e-48 196.8 323 39.3
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 6.3e-48 196.1 222 48.2
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.3e-37 161.0 156 50.6
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 5.0e-37 159.8 110 63.6
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-31 142.1 179 45.3
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.0e-29 133.3 177 45.2
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.9e-28 131.3 76 69.7
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 2.1e-27 127.9 138 47.8
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.4e-26 125.2 110 58.2
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 6.8e-26 122.9 219 36.1
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.2e-25 122.1 85 68.2
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.9e-24 117.5 110 54.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 6.0e-22 109.8 143 44.1
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-21 108.6 77 62.3
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 3.0e-21 107.5 77 62.3
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 3.0e-21 107.5 151 42.4
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 5.0e-21 106.7 123 48.0
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 1.5e-20 105.1 97 55.7
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-20 104.8 151 41.1
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 1.9e-20 104.8 93 58.1
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-18 98.6 112 49.1
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 4.0e-18 97.1 74 58.1
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.0e-17 94.7 84 61.9
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 2.6e-17 94.4 99 50.5
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 3.4e-17 94.0 143 42.0
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.8e-17 93.2 57 66.7
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.5e-14 84.0 56 66.1
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 4.6e-14 83.6 121 38.0
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.3e-13 82.0 56 62.5
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 4.0e-10 70.5 179 29.1
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-09 68.9 55 58.2
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.2e-09 68.9 190 28.4
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.3e-08 65.5 53 54.7
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.3e-08 65.5 179 27.9
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 2.2e-08 64.7 68 45.6
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.4e-08 63.2 175 28.6
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.2e-07 59.3 92 37.0
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 1.6e-06 58.5 72 43.1
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.1e-06 58.2 82 40.2
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 4.6e-06 57.0 49 51.0


User provided reference genes

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