Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 4.8e-169 597.8 317 100.0
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 1.4e-104 383.6 330 66.4
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 9.2e-104 380.9 296 71.3
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 2.3e-102 376.3 321 66.7
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 5.6e-101 371.7 293 70.3
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.8e-99 366.7 325 64.9
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 4.0e-99 365.5 265 72.1
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 4.4e-98 362.1 318 66.4
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 9.9e-98 360.9 303 65.7
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 1.7e-97 360.1 328 63.1
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 3.8e-97 359.0 308 64.9
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 6.4e-97 358.2 295 65.1
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.1e-96 357.5 325 63.4
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.4e-96 357.1 290 67.6
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.2e-96 355.9 284 67.6
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 4.2e-96 355.5 285 67.4
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 4.2e-96 355.5 317 65.0
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 7.1e-96 354.8 268 71.3
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 1.2e-95 354.0 294 67.3
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 3.5e-95 352.4 326 60.4
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 3.5e-95 352.4 324 62.7
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 4.6e-95 352.1 319 61.1
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 1.7e-94 350.1 259 70.7
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 3.9e-94 349.0 319 61.8
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 5.1e-94 348.6 323 59.8
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 8.7e-94 347.8 260 70.4
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 8.7e-94 347.8 319 63.3
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 8.7e-94 347.8 320 62.2
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.9e-93 346.7 259 69.9
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 3.3e-93 345.9 261 71.3
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 5.6e-93 345.1 326 60.4
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 5.6e-93 345.1 248 73.0
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 7.3e-93 344.7 302 63.2
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 9.6e-93 344.4 290 64.5
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.6e-92 343.6 260 68.8
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 6.2e-92 341.7 317 60.6
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 6.2e-92 341.7 315 60.3
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 6.2e-92 341.7 255 70.6
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 1.8e-91 340.1 296 62.8
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 4.0e-91 339.0 255 70.6
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 5.3e-91 338.6 276 65.6
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 5.3e-91 338.6 303 59.7
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 9.0e-91 337.8 321 61.1
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 9.0e-91 337.8 248 69.4
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 1.2e-90 337.4 233 76.4
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 3.4e-90 335.9 247 72.5
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 4.5e-90 335.5 309 62.8
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 5.8e-90 335.1 313 60.7
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 7.6e-90 334.7 317 60.6
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 2.2e-89 333.2 371 55.3
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 2.9e-89 332.8 267 67.8
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 3.8e-89 332.4 316 62.0
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 8.4e-89 331.3 295 63.1
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 1.1e-88 330.9 298 62.8
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 1.9e-88 330.1 328 59.1
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 3.2e-88 329.3 298 61.7
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 7.1e-88 328.2 235 71.5
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 1.2e-87 327.4 303 61.7
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 2.1e-87 326.6 276 64.1
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 2.1e-87 326.6 257 66.1
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 3.5e-87 325.9 321 59.5
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.0e-86 324.3 312 59.0
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.8e-86 323.6 304 61.2
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 3.0e-86 322.8 304 60.9
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 6.7e-86 321.6 320 58.8
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.1e-85 320.9 320 59.1
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 1.5e-85 320.5 292 62.7
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 2.5e-85 319.7 213 80.3
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 3.3e-85 319.3 324 57.7
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 5.6e-85 318.5 323 59.1
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 9.6e-85 317.8 329 58.4
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 1.3e-84 317.4 297 59.9
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.3e-84 317.4 344 57.3
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 2.1e-84 316.6 316 59.2
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 2.1e-84 316.6 306 60.5
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 2.8e-84 316.2 234 70.9
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 1.1e-83 314.3 323 57.3
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 1.4e-83 313.9 340 54.7
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 2.4e-83 313.2 312 59.0
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 3.1e-83 312.8 317 58.7
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 5.3e-83 312.0 312 59.0
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 9.0e-83 311.2 314 58.0
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 9.0e-83 311.2 223 74.0
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 9.0e-83 311.2 325 58.2
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 9.0e-83 311.2 304 58.6
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 1.5e-82 310.5 304 58.2
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 1.5e-82 310.5 322 58.7
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 2.0e-82 310.1 314 56.4
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 5.8e-82 308.5 265 63.0
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 6.4e-81 305.1 248 65.3
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 1.9e-80 303.5 269 61.0
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 3.2e-80 302.8 316 56.3
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 1.6e-79 300.4 251 63.7
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.6e-79 300.4 331 54.7
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 2.7e-79 299.7 291 58.8
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 1.3e-78 297.4 292 59.2
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 6.7e-78 295.0 198 74.2
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 6.7e-78 295.0 209 76.1
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 6.7e-78 295.0 193 77.2
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 1.1e-77 294.3 211 73.0
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 7.4e-77 291.6 274 60.2
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 7.4e-77 291.6 205 72.7
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 1.4e-75 287.3 198 73.2
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 4.8e-68 262.3 258 53.5
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 2.6e-66 256.5 192 67.7
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 4.8e-60 235.7 201 59.7
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 6.9e-59 231.9 307 45.3
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 2.2e-57 226.9 200 57.5
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 7.2e-56 221.9 224 52.7
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 4.8e-52 209.1 217 52.1
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 3.1e-51 206.5 151 66.2
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 4.1e-51 206.1 150 70.7
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 1.5e-32 144.4 125 58.4
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 7.2e-32 142.1 184 48.9
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.2e-31 141.4 172 48.3
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 1.2e-29 134.8 180 49.4
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.5e-16 91.3 78 62.8
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 2.5e-16 90.5 78 62.8
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 3.2e-11 73.6 50 80.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 6.6e-09 65.9 67 58.2
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 4.0e-06 56.6 108 42.6


User provided reference genes

Program Settings