Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 0.0e+00 1641.7 854 100.0
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 0.0e+00 1134.0 858 71.1
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 0.0e+00 1126.3 863 71.7
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 0.0e+00 1095.5 945 65.3
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.1e-307 1058.9 1025 60.0
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.5e-286 989.6 763 68.3
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 9.3e-284 980.3 892 61.2
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 4.8e-280 968.0 868 61.5
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.5e-278 963.0 866 61.4
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.4e-276 956.4 844 62.4
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 1.8e-274 949.5 868 61.6
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 3.3e-273 945.3 900 60.6
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 1.4e-268 929.9 867 59.2
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.7e-267 925.6 845 61.3
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.4e-263 913.3 875 58.6
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 2.9e-261 905.6 872 58.9
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.3e-258 896.7 871 59.4
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 7.4e-257 891.0 869 57.7
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 9.0e-255 884.0 879 57.7
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.2e-254 883.6 855 58.5
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.2e-253 879.4 875 57.4
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 5.5e-252 874.8 941 54.7
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 4.6e-251 871.7 841 59.5
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.0e-250 870.5 879 56.0
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.0e-250 869.0 869 58.0
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.0e-249 866.3 873 56.7
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 3.3e-249 865.5 867 57.8
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 1.7e-248 863.2 875 56.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.7e-248 863.2 869 56.6
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.2e-248 862.8 857 56.4
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.2e-248 862.8 870 59.1
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.8e-248 861.7 869 56.7
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 8.2e-248 860.9 831 60.4
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 1.1e-247 860.5 835 60.2
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 2.4e-247 859.4 753 63.1
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 3.1e-247 859.0 831 59.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 3.8e-245 852.0 975 52.6
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 6.5e-245 851.3 720 65.4
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 2.5e-244 849.4 880 56.4
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.5e-244 849.4 830 59.2
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 5.5e-244 848.2 863 56.0
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 5.5e-244 848.2 831 59.3
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 6.1e-243 844.7 869 55.9
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.6e-241 839.3 839 58.6
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 4.4e-241 838.6 875 56.6
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 5.7e-241 838.2 829 58.6
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 7.4e-241 837.8 860 54.8
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.4e-239 832.8 888 54.8
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 7.7e-238 827.8 861 56.7
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.0e-237 827.4 767 61.1
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.3e-237 827.0 871 55.1
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 5.0e-237 825.1 842 58.0
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 2.1e-235 819.7 869 54.9
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 2.7e-235 819.3 881 54.5
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 8.8e-234 814.3 870 54.9
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 1.5e-233 813.5 861 54.7
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 2.6e-233 812.8 872 54.6
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 2.6e-233 812.8 829 56.6
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.7e-233 811.6 832 56.0
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 7.5e-233 811.2 801 57.1
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.8e-231 806.6 868 55.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 2.4e-231 806.2 829 56.0
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 4.1e-231 805.4 872 53.9
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 9.1e-231 804.3 827 54.4
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.6e-230 803.5 832 55.9
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 2.7e-230 802.7 839 55.7
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.7e-229 800.0 917 52.7
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.2e-229 799.7 879 52.2
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 2.9e-229 799.3 867 54.8
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 1.9e-228 796.6 829 54.9
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 5.5e-228 795.0 882 53.3
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 9.4e-228 794.3 868 53.0
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 3.6e-227 792.3 842 55.6
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 6.1e-227 791.6 879 53.5
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 8.0e-227 791.2 838 54.3
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 5.2e-226 788.5 859 53.0
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 2.6e-225 786.2 839 54.7
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.3e-224 783.9 851 52.6
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 6.3e-224 781.6 870 53.2
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 3.5e-222 775.8 873 53.8
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.0e-221 774.2 839 53.5
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 1.1e-220 770.8 869 52.2
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 3.6e-219 765.8 871 52.6
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 2.6e-217 759.6 746 59.2
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 3.7e-216 755.7 609 66.3
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 6.3e-216 755.0 850 52.2
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.2e-214 750.7 842 52.5
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 1.6e-214 750.4 887 50.5
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 5.9e-214 748.4 832 53.5
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-213 747.3 867 52.6
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 2.3e-213 746.5 825 53.9
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 5.0e-213 745.3 826 52.8
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 3.3e-212 742.7 867 52.4
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 4.7e-211 738.8 780 54.9
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.4e-210 737.3 827 53.7
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.5e-209 733.8 871 48.8
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 2.6e-209 733.0 794 54.3
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 3.4e-209 732.6 874 52.5
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-207 727.2 862 52.3
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 1.3e-205 720.7 863 52.3
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.9e-204 716.8 841 50.7
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.2e-203 714.1 868 49.5
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.1e-203 713.4 731 55.4
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.8e-202 710.3 830 53.1
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 6.8e-202 708.4 762 53.1
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 3.4e-201 706.1 872 51.6
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 4.4e-201 705.7 873 49.3
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 6.2e-195 685.3 785 52.0
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.2e-191 672.9 779 51.7
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 6.6e-189 665.2 825 48.7
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 2.1e-187 660.2 747 54.6
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 3.6e-187 659.4 804 49.9
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 5.2e-186 655.6 865 49.8
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.4e-185 652.5 890 45.3
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 3.2e-183 646.4 730 51.8
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 2.5e-180 636.7 870 46.3
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.6e-179 634.0 814 46.7
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 3.1e-178 629.8 868 46.9
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 9.9e-177 624.8 556 63.1
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 8.1e-171 605.1 920 42.4
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 3.7e-163 579.7 813 43.9
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 2.9e-160 570.1 814 45.2
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.9e-157 559.7 875 42.7
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.0e-154 549.7 558 55.4
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.5e-153 547.7 830 43.4
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 2.1e-147 527.3 758 44.3
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 3.0e-141 506.9 918 38.0
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 8.7e-141 505.4 448 63.4
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.1e-134 484.2 655 43.4
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 2.7e-134 483.8 555 50.6
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.7e-131 474.6 864 37.8
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 4.7e-126 456.4 542 50.4
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.8e-123 447.2 498 52.4
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 4.2e-119 433.3 538 51.1
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.0e-108 397.9 801 35.0
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.3e-91 342.0 639 33.6
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 4.7e-86 323.6 672 33.9
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.2e-83 314.7 368 52.4
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.3e-80 304.7 439 45.3
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 8.7e-64 249.6 315 48.3
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 8.1e-62 243.0 279 52.0
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 7.6e-60 236.5 246 56.5
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.4e-51 206.8 252 48.8
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 1.8e-48 198.7 169 67.5
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.3e-39 167.5 195 52.3
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 2.1e-33 148.7 138 58.7
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 1.1e-26 126.3 163 47.9
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-26 125.9 186 43.5
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 4.3e-23 114.4 174 44.3
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.7e-22 112.5 205 39.0
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.7e-22 112.5 205 39.0
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-18 99.8 186 38.7
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-18 99.8 186 38.7
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 9.4e-18 96.7 96 57.3
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 6.1e-17 94.0 316 27.2
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 3.9e-16 91.3 133 45.1
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 3.3e-15 88.2 60 75.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 3.5e-12 78.2 173 35.3
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 2.2e-11 75.5 173 33.5
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 2.2e-11 75.5 204 32.4
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 2.9e-11 75.1 148 36.5
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.9e-11 75.1 101 46.5
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 8.5e-11 73.6 58 56.9
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 4.2e-10 71.2 53 58.5
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 5.5e-10 70.9 85 54.1
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-09 68.6 205 24.4
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 4.7e-09 67.8 46 73.9
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 8.8e-08 63.5 35 85.7
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-07 60.8 47 55.3
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 2.2e-06 58.9 95 41.1
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 6.3e-06 57.4 60 55.0


User provided reference genes

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