Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 4.2e-79 298.1 170 100.0
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 6.6e-32 141.4 181 59.1
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.3e-31 139.0 181 58.6
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.1e-30 136.3 193 48.2
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 6.2e-30 134.8 193 49.2
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 2.3e-29 132.9 198 49.0
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 4.3e-23 112.1 193 42.5
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 8.1e-22 107.8 188 47.3
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 6.9e-21 104.8 176 44.3
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 7.6e-20 101.3 176 42.6
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 7.6e-20 101.3 179 42.5
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.3e-19 100.5 191 43.5
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 2.2e-19 99.8 176 41.5
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 6.4e-19 98.2 163 47.9
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 6.4e-19 98.2 173 41.0
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.4e-18 97.1 187 43.3
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 3.2e-18 95.9 181 39.8
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 4.2e-18 95.5 197 46.7
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 5.4e-18 95.1 197 39.1
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 7.1e-18 94.7 182 40.7
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 7.1e-18 94.7 194 40.7
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.2e-17 94.0 191 42.4
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.2e-17 94.0 177 40.7
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 4.6e-17 92.0 191 42.4
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 6.0e-17 91.7 211 39.3
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 6.0e-17 91.7 186 40.9
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 7.8e-17 91.3 180 38.9
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.0e-16 90.9 197 40.1
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.0e-16 90.9 198 39.4
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.0e-16 90.9 198 39.4
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.7e-16 90.1 190 37.9
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.7e-16 90.1 201 37.8
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.7e-16 90.1 188 38.3
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.0e-16 89.4 181 38.7
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 3.0e-16 89.4 188 39.9
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.0e-16 89.4 182 39.0
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 3.9e-16 89.0 192 39.1
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 3.9e-16 89.0 183 40.4
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.9e-16 89.0 177 40.7
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.9e-16 89.0 177 40.7
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.9e-16 89.0 181 39.8
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 5.1e-16 88.6 195 40.5
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 5.1e-16 88.6 195 40.5
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 5.1e-16 88.6 186 38.7
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 5.1e-16 88.6 193 40.9
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 6.6e-16 88.2 192 39.6
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 6.6e-16 88.2 192 39.6
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 8.7e-16 87.8 165 43.0
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-15 87.4 192 39.1
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-15 87.4 192 39.1
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.9e-15 86.7 195 36.4
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.9e-15 86.7 180 36.7
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.5e-15 86.3 194 39.2
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.6e-15 85.1 177 41.2
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 5.6e-15 85.1 196 37.8
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 7.3e-15 84.7 196 38.8
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 7.3e-15 84.7 185 37.8
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 9.6e-15 84.3 194 39.7
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 9.6e-15 84.3 210 37.6
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.3e-14 84.0 195 38.5
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 1.6e-14 83.6 194 37.1
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 1.6e-14 83.6 194 37.1
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.1e-14 83.2 205 39.5
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.1e-14 83.2 190 38.9
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 2.8e-14 82.8 193 38.3
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 2.8e-14 82.8 193 37.3
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 2.8e-14 82.8 194 39.2
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 2.8e-14 82.8 193 37.3
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.8e-14 82.8 188 37.8
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 3.6e-14 82.4 203 36.5
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 3.6e-14 82.4 186 38.2
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 4.8e-14 82.0 175 37.1
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 6.2e-14 81.6 177 36.7
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 6.2e-14 81.6 174 40.8
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 8.1e-14 81.3 183 38.3
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 8.1e-14 81.3 216 36.6
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.1e-13 80.9 123 43.9
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.4e-13 80.5 80 61.2
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.4e-13 80.5 184 34.2
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 1.4e-13 80.5 191 37.7
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.8e-13 80.1 174 36.2
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.4e-13 79.7 182 39.6
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 2.4e-13 79.7 183 36.1
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 3.1e-13 79.3 187 38.5
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.1e-13 79.3 196 36.7
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 3.1e-13 79.3 172 45.3
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.0e-13 79.0 73 61.6
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 5.3e-13 78.6 185 33.5
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 6.9e-13 78.2 177 38.4
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 9.0e-13 77.8 190 38.4
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 9.0e-13 77.8 190 38.4
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 9.0e-13 77.8 161 38.5
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.2e-12 77.4 192 37.0
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.5e-12 77.0 73 58.9
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.5e-12 77.0 77 57.1
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.5e-12 77.0 194 37.1
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 2.6e-12 76.3 193 35.8
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 2.6e-12 76.3 193 35.8
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 2.6e-12 76.3 193 35.8
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.4e-12 75.9 170 41.2
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 4.5e-12 75.5 194 35.6
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.8e-12 75.1 181 37.6
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.3e-11 73.9 176 36.4
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.3e-11 73.9 74 58.1
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.7e-11 73.6 149 37.6
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.7e-11 73.6 169 38.5
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 2.9e-11 72.8 167 39.5
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 3.8e-11 72.4 83 49.4
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.9e-11 72.0 186 33.3
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 6.4e-11 71.6 193 34.7
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 8.4e-11 71.2 176 34.7
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 8.4e-11 71.2 170 35.9
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.1e-10 70.9 67 58.2
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.1e-10 70.9 182 36.8
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-10 70.9 79 51.9
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.1e-10 70.9 79 51.9
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.4e-10 70.5 72 55.6
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.4e-10 70.5 163 36.2
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.4e-10 69.7 147 39.5
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 3.2e-10 69.3 69 58.0
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 3.2e-10 69.3 184 39.7
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.2e-10 68.9 64 62.5
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 5.4e-10 68.6 79 50.6
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 5.4e-10 68.6 79 50.6
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 5.4e-10 68.6 71 56.3
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 7.1e-10 68.2 70 57.1
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 7.1e-10 68.2 190 35.3
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 9.3e-10 67.8 124 37.1
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.6e-09 67.0 69 59.4
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.6e-09 67.0 75 54.7
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 2.1e-09 66.6 76 52.6
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 2.7e-09 66.2 120 40.8
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.0e-08 64.3 70 51.4
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 1.0e-08 64.3 183 38.8
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.8e-08 63.5 99 40.4
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 3.9e-08 62.4 71 52.1
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 6.7e-08 61.6 181 34.8
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.5e-07 60.5 181 32.0
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 4.3e-07 58.9 173 35.3
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.6e-06 57.0 181 39.2


User provided reference genes

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