Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 4.8e-123 444.5 222 100.0
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.5e-103 379.0 222 83.8
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 5.3e-98 361.3 222 80.6
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 2.9e-96 355.5 221 78.3
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.5e-92 343.2 222 76.1
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 8.2e-91 337.4 222 73.9
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 3.1e-90 335.5 223 73.5
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 5.9e-89 331.3 219 73.1
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.0e-88 330.5 223 73.1
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.0e-88 330.5 221 73.3
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 2.2e-88 329.3 222 72.1
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 2.2e-88 329.3 222 71.6
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 3.8e-88 328.6 222 73.0
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 6.5e-88 327.8 219 73.1
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.4e-87 326.6 220 73.2
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.2e-87 325.5 223 72.6
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 3.2e-87 325.5 222 72.1
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 3.2e-87 325.5 221 71.0
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.5e-87 324.7 220 70.5
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 5.5e-87 324.7 222 71.2
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 5.5e-87 324.7 222 70.7
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 9.4e-87 323.9 219 72.1
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.2e-86 323.6 222 69.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.1e-86 322.8 219 72.6
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.7e-86 322.4 219 71.7
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 7.9e-86 320.9 219 70.8
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 7.9e-86 320.9 221 69.7
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.8e-85 319.7 223 72.6
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.8e-85 319.7 222 72.1
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 3.0e-85 318.9 224 71.4
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.9e-85 318.5 222 70.7
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.1e-85 318.2 218 69.3
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.1e-85 318.2 220 68.2
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 5.1e-85 318.2 221 71.0
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.1e-84 317.0 221 70.1
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.7e-84 314.7 218 71.6
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 5.7e-84 314.7 215 71.2
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 2.8e-83 312.4 222 69.8
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 2.8e-83 312.4 213 71.4
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.8e-83 312.4 223 69.5
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 4.8e-83 311.6 231 68.4
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 4.8e-83 311.6 222 68.9
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 6.3e-83 311.2 221 70.6
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.8e-82 309.7 221 69.7
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.8e-82 309.7 221 68.8
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.4e-82 309.3 222 67.6
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 7.0e-82 307.8 222 67.6
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 1.2e-81 307.0 222 66.2
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.0e-81 306.2 222 67.1
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 2.0e-81 306.2 221 67.4
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.0e-81 306.2 222 67.1
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 4.5e-81 305.1 223 67.3
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.3e-80 303.5 221 66.1
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 3.8e-80 302.0 222 68.0
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 5.0e-80 301.6 214 69.6
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 6.5e-80 301.2 222 67.6
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 2.5e-79 299.3 222 64.9
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.5e-79 299.3 223 65.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 4.2e-79 298.5 241 63.1
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 5.5e-79 298.1 222 68.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 5.5e-79 298.1 245 61.6
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 4.7e-78 295.0 222 68.5
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 8.0e-78 294.3 223 66.4
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 8.0e-78 294.3 222 64.4
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.4e-77 293.5 223 65.9
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.8e-77 293.1 223 64.6
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.8e-77 293.1 260 59.2
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 2.3e-77 292.7 223 64.1
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 2.3e-77 292.7 222 65.8
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.0e-77 292.4 220 65.0
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 3.3e-76 288.9 223 63.2
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.8e-75 285.8 240 61.7
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-74 283.9 251 59.0
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 7.0e-74 281.2 251 58.2
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.2e-73 280.4 303 52.1
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 3.5e-73 278.9 223 61.4
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.5e-73 278.5 222 60.4
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 7.7e-73 277.7 250 57.6
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 1.7e-72 276.6 291 51.2
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.0e-72 275.0 222 59.0
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.5e-71 273.5 224 61.2
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.2e-71 271.9 223 59.6
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 7.2e-71 271.2 223 59.2
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 9.4e-71 270.8 219 61.6
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.6e-70 270.0 298 50.3
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.6e-70 268.9 220 57.3
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 4.7e-70 268.5 222 58.1
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 6.1e-70 268.1 222 59.5
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 6.1e-70 268.1 251 54.6
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 6.1e-70 268.1 220 59.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 8.0e-70 267.7 219 58.9
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-69 267.3 216 61.6
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-69 266.9 224 58.5
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.4e-69 266.9 224 58.5
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.4e-69 266.9 222 58.1
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 4.0e-69 265.4 224 58.0
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.0e-69 265.4 224 58.0
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.0e-69 265.4 224 58.0
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 4.0e-69 265.4 224 58.0
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.0e-69 265.4 216 61.1
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 6.8e-69 264.6 217 58.5
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 6.8e-69 264.6 222 57.7
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-68 263.8 224 58.0
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-68 262.7 214 58.9
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 7.5e-68 261.2 219 58.0
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.5e-68 261.2 223 58.3
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 2.2e-67 259.6 217 57.1
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.3e-67 258.1 219 58.9
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.1e-66 257.3 218 60.6
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.1e-66 257.3 231 56.3
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.4e-66 256.9 223 56.5
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 5.4e-66 255.0 223 55.6
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.2e-65 253.8 216 58.3
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.6e-65 253.4 214 57.0
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 5.9e-65 251.5 197 60.4
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.7e-62 242.7 200 61.0
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.0e-61 240.7 216 56.5
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.3e-61 239.6 157 72.6
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 3.0e-61 239.2 157 73.2
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 6.8e-61 238.0 157 73.2
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 6.8e-61 238.0 221 55.2
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 2.6e-60 236.1 187 61.0
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 5.7e-60 235.0 218 55.0
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 3.5e-57 225.7 157 69.4
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 4.5e-57 225.3 221 52.0
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 7.3e-55 218.0 217 53.5
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 6.1e-54 214.9 209 55.0
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 6.1e-54 214.9 209 55.0
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 6.1e-54 214.9 217 53.0
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 8.0e-54 214.5 209 55.5
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.4e-53 213.8 209 55.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 4.0e-53 212.2 209 54.1
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.0e-53 212.2 218 52.3
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.9e-53 211.1 215 53.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.5e-52 208.0 209 54.1
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.2e-51 206.5 209 52.6
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 7.3e-47 191.4 231 48.5
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.2e-46 190.7 136 67.6
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 9.8e-44 181.0 223 46.6
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 9.8e-44 181.0 127 70.1
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.3e-43 180.6 136 66.9
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 2.4e-42 176.4 134 67.2
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 7.0e-42 174.9 195 46.2
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.6e-41 173.7 235 45.5
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.3e-39 165.6 143 58.7
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 2.3e-37 159.8 136 56.6
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 5.2e-37 158.7 105 72.4
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 6.8e-37 158.3 127 63.0
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 5.8e-36 155.2 133 60.9
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 6.4e-35 151.8 120 61.7
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.4e-34 150.6 120 63.3
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 7.1e-34 148.3 120 62.5
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.7e-32 143.7 234 38.9
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 3.0e-32 142.9 214 40.7
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.1e-31 141.0 89 74.2
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 4.7e-30 135.6 194 42.3
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 8.9e-29 131.3 184 44.0
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.0e-28 130.2 144 45.8
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.6e-28 128.3 105 60.0
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.7e-25 119.8 251 34.7
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.1e-24 115.5 83 67.5
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.2e-22 110.9 76 68.4
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.3e-19 100.9 92 54.3
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.4e-18 97.4 95 55.8
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.6e-17 94.0 84 54.8
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-13 81.3 85 56.5
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.6e-12 76.6 176 35.8
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 4.2e-10 69.3 166 30.7
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 5.4e-10 68.9 151 33.8
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 7.9e-09 65.1 76 50.0
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.3e-08 63.5 153 29.4
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 1.9e-07 60.5 185 31.4
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 3.3e-07 59.7 135 34.1
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 2.8e-06 56.6 139 32.4
SalBow1G2146 Salvia bowleyana HOM05D001535 ORTHO05D003710 6.2e-06 55.5 136 29.4


User provided reference genes

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