Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 0.0e+00 1745.7 882 100.0
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 0.0e+00 1436.0 916 80.3
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 0.0e+00 1427.5 884 81.4
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 0.0e+00 1397.1 876 81.2
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 0.0e+00 1289.2 883 75.5
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 0.0e+00 1254.2 881 73.7
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 0.0e+00 1247.6 879 72.5
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 0.0e+00 1246.5 880 72.5
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 0.0e+00 1245.3 879 72.2
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 0.0e+00 1243.0 900 72.4
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 0.0e+00 1243.0 879 72.5
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 0.0e+00 1240.7 881 72.6
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 0.0e+00 1240.3 898 71.5
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 0.0e+00 1238.0 913 70.0
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 0.0e+00 1235.7 887 71.7
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1231.9 882 72.0
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1227.2 882 72.0
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 0.0e+00 1221.1 877 71.6
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 0.0e+00 1219.9 913 69.0
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 0.0e+00 1216.8 886 70.3
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 0.0e+00 1210.3 886 71.8
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 0.0e+00 1209.9 890 71.1
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 0.0e+00 1206.8 886 70.9
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1204.5 883 71.6
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 0.0e+00 1203.3 883 70.7
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 0.0e+00 1201.4 917 69.2
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 0.0e+00 1201.4 883 70.2
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 0.0e+00 1200.7 885 71.0
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1199.1 886 70.5
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 0.0e+00 1197.2 875 71.1
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1196.8 880 70.3
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 0.0e+00 1192.2 889 70.9
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1191.4 885 69.7
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 0.0e+00 1190.3 880 70.1
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1187.2 886 69.6
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 0.0e+00 1184.5 886 69.6
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 0.0e+00 1184.1 884 69.3
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 0.0e+00 1181.8 891 69.0
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 0.0e+00 1179.9 886 69.6
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1176.8 884 69.7
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1175.2 879 69.7
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1174.8 881 69.8
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 0.0e+00 1174.8 888 70.2
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 0.0e+00 1174.5 877 70.6
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1172.5 884 69.6
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 0.0e+00 1171.4 885 68.7
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 0.0e+00 1168.7 884 69.1
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1168.3 882 69.3
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1166.4 884 69.7
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 0.0e+00 1164.8 886 69.1
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 0.0e+00 1164.1 876 69.7
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1163.7 882 68.8
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 0.0e+00 1163.3 910 68.5
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1162.5 876 68.7
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 0.0e+00 1161.4 878 69.7
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 0.0e+00 1160.6 910 67.7
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 0.0e+00 1160.2 887 69.2
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1157.1 886 68.3
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 0.0e+00 1154.8 876 69.2
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 0.0e+00 1153.7 855 70.1
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 0.0e+00 1152.5 877 68.9
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 0.0e+00 1148.7 883 67.8
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1147.1 881 69.0
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1146.7 887 67.9
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1146.0 878 68.1
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 0.0e+00 1130.9 885 67.6
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 0.0e+00 1125.9 886 67.0
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 0.0e+00 1120.5 882 66.4
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 0.0e+00 1118.6 880 66.5
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 0.0e+00 1118.2 944 64.1
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 0.0e+00 1115.9 883 66.8
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 0.0e+00 1108.6 881 66.2
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 0.0e+00 1106.3 843 68.4
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 0.0e+00 1095.5 881 65.7
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 0.0e+00 1091.6 881 65.7
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1091.3 880 65.9
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 0.0e+00 1083.6 771 73.7
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 0.0e+00 1081.6 772 72.9
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 0.0e+00 1080.1 877 64.5
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 0.0e+00 1077.8 865 65.9
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 0.0e+00 1077.4 880 64.9
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 0.0e+00 1075.5 931 62.0
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 6.0e-312 1073.9 885 64.9
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 9.1e-311 1070.1 882 63.8
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 4.6e-310 1067.8 815 68.2
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 7.8e-310 1067.0 877 64.1
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 3.0e-309 1065.1 877 64.0
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 9.8e-305 1050.0 859 64.3
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 6.4e-304 1047.3 1121 53.8
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 5.4e-303 1044.3 887 64.1
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 1.0e-301 1040.0 885 63.6
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 5.1e-301 1037.7 702 75.9
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 3.3e-300 1035.0 859 62.9
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 1.2e-299 1033.1 709 74.9
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 1.2e-297 1026.5 730 72.9
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 1.3e-296 1023.1 868 63.5
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 7.1e-295 1017.3 866 63.4
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 9.2e-295 1016.9 876 62.2
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 2.7e-294 1015.4 868 62.4
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 1.1e-287 993.4 915 59.1
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.9e-287 992.6 889 59.2
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 2.4e-287 992.3 880 61.1
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 1.9e-284 982.6 671 74.8
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.1e-279 966.8 629 78.2
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 9.0e-274 947.2 883 58.8
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.7e-256 889.8 869 56.6
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 3.9e-245 852.0 655 69.3
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 1.2e-233 813.9 895 52.7
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 3.0e-205 719.5 870 48.3
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 5.4e-202 708.8 986 43.7
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 2.0e-201 706.8 961 44.1
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 8.6e-192 674.9 736 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 1.1e-191 674.5 836 46.1
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 4.7e-190 669.1 479 71.8
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 2.8e-174 616.7 585 56.2
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 6.2e-174 615.5 824 46.2
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.2e-163 580.5 533 61.7
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 7.6e-148 528.9 411 67.6
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 3.6e-137 493.4 433 63.5
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 1.2e-113 415.2 661 39.5
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 6.3e-110 402.9 425 52.0
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 8.2e-110 402.5 284 72.2
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 1.4e-109 401.7 284 69.7
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 2.9e-107 394.0 916 31.1
Oeu050624.1 Olea europaea HOM05D004340 ORTHO05D006363 9.2e-93 345.9 186 91.4
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.1e-68 265.0 303 50.2
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 1.0e-67 262.7 840 25.6
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 4.0e-64 250.8 188 65.4
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 3.0e-59 234.6 174 67.2
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 1.2e-57 229.2 176 64.8
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 7.4e-42 176.8 107 79.4
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 9.0e-40 169.9 172 58.7
SHI21659 Sapria himalayana HOM05D004340 ORTHO05D006363 1.5e-39 169.1 140 63.6
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 1.3e-38 166.0 362 33.7
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 2.9e-38 164.9 183 42.6
Cfa022061 Carpinus fangiana HOM05D004340 ORTHO05D125423 6.2e-33 147.1 536 24.8
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.1e-32 146.4 192 49.0
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 5.3e-32 144.1 181 45.9
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 9.7e-26 123.2 82 78.0
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 5.3e-24 117.5 69 81.2
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 5.9e-23 114.0 119 53.8
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 5.5e-21 107.5 94 56.4
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 1.4e-19 102.8 76 64.5
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 1.1e-16 93.2 114 50.9
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 2.6e-15 88.6 202 33.2
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 5.9e-15 87.4 117 44.4
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 2.9e-14 85.1 60 66.7
BolC2t12024H Brassica oleracea HOM05D004340 ORTHO05D040691 1.4e-13 82.8 150 38.7
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 2.5e-13 82.0 121 40.5
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 5.5e-13 80.9 71 59.2
Lj1g0006325 Lotus japonicus HOM05D000319 ORTHO05D000903 1.1e-10 73.2 207 24.2
SHI21660 Sapria himalayana HOM05D004340 ORTHO05D006363 3.3e-10 71.6 100 41.0
FAN24G2810 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.4e-10 71.2 62 59.7
Oeu056217.2 Olea europaea HOM05D000319 ORTHO05D000903 5.7e-10 70.9 165 28.5
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 1.3e-09 69.7 69 50.7
SHI21661 Sapria himalayana HOM05D004340 ORTHO05D006363 1.7e-09 69.3 70 52.9
C02p59600 Brassica napus HOM05D004340 ORTHO05D040691 3.7e-09 68.2 109 40.4
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 5.3e-08 64.3 80 41.2
MD13G1068900 Malus domestica HOM05D004340 ORTHO05D006363 1.5e-07 62.8 36 77.8
RcHm_v2.0_Chr1g0327871 Rosa chinensis HOM05D004340 ORTHO05D006363 2.0e-07 62.4 40 75.0
C08p42990 Brassica napus HOM05D004340 ORTHO05D014919 4.5e-07 61.2 116 32.8
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 5.9e-07 60.8 115 33.9


User provided reference genes

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