Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 7.2e-74 280.4 135 100.0
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.0e-51 206.8 131 71.8
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.3e-50 201.8 129 71.3
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.2e-46 189.1 129 68.2
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-45 186.8 129 67.4
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.5e-42 175.6 124 67.7
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.6e-41 172.9 135 65.9
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 8.1e-41 170.6 135 65.2
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 5.2e-40 167.9 129 65.9
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 8.9e-40 167.2 133 60.2
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.4e-39 165.2 130 61.5
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 9.9e-39 163.7 136 61.0
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.3e-38 163.3 135 59.3
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 8.4e-38 160.6 140 57.9
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 8.4e-38 160.6 140 57.9
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.1e-37 160.2 133 61.7
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 3.2e-37 158.7 134 58.2
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 1.2e-36 156.8 128 64.8
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.6e-36 156.4 136 56.6
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.7e-35 152.9 138 58.0
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 3.3e-34 148.7 134 59.0
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 3.3e-34 148.7 137 60.6
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.3e-34 148.3 138 58.7
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 9.6e-34 147.1 139 55.4
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.8e-33 145.6 140 57.1
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 4.7e-33 144.8 138 55.8
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.4e-32 143.3 138 55.1
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 2.4e-32 142.5 133 58.6
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 2.4e-32 142.5 128 60.9
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 8.9e-32 140.6 141 55.3
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.2e-31 140.2 142 54.2
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.0e-31 139.4 135 54.1
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.4e-31 138.3 139 55.4
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 4.4e-31 138.3 131 55.0
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.4e-31 138.3 131 55.0
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 4.4e-31 138.3 137 54.7
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 5.8e-31 137.9 131 54.2
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 9.9e-31 137.1 118 59.3
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.3e-30 136.7 134 53.0
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 1.3e-30 136.7 129 57.4
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.2e-30 136.0 142 52.8
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 2.2e-30 136.0 136 54.4
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 2.9e-30 135.6 120 57.5
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.9e-30 135.6 141 54.6
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 3.8e-30 135.2 119 58.8
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 4.9e-30 134.8 141 52.5
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 6.4e-30 134.4 142 52.8
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 8.4e-30 134.0 144 51.4
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.1e-29 133.7 152 51.3
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.4e-29 133.3 132 54.5
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.4e-29 132.5 138 52.2
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 3.2e-29 132.1 142 53.5
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 3.2e-29 132.1 134 53.0
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 4.2e-29 131.7 125 56.0
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 5.4e-29 131.3 146 50.0
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 5.4e-29 131.3 144 50.7
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 5.4e-29 131.3 132 53.8
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 5.4e-29 131.3 137 55.5
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 5.4e-29 131.3 137 49.6
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 7.1e-29 131.0 144 50.0
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 7.1e-29 131.0 144 50.0
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 7.1e-29 131.0 139 51.8
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 7.1e-29 131.0 143 49.7
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 9.3e-29 130.6 144 50.0
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.2e-28 130.2 137 51.1
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.2e-28 130.2 140 51.4
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 2.1e-28 129.4 132 53.8
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 2.7e-28 129.0 140 51.4
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 2.7e-28 129.0 145 49.7
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.7e-28 129.0 140 50.0
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 2.7e-28 129.0 138 52.2
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 2.7e-28 129.0 120 55.0
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 2.7e-28 129.0 133 52.6
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.7e-28 129.0 114 57.0
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.5e-28 128.6 143 48.3
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.5e-28 128.6 155 47.7
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 3.5e-28 128.6 107 60.7
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 4.6e-28 128.3 142 48.6
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.6e-28 128.3 136 50.0
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 6.0e-28 127.9 145 47.6
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 7.8e-28 127.5 140 49.3
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 7.8e-28 127.5 131 52.7
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.0e-27 127.1 111 57.7
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.7e-27 126.3 118 53.4
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 1.7e-27 126.3 90 64.4
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.3e-27 125.9 137 54.0
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 2.3e-27 125.9 140 47.9
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 3.0e-27 125.6 133 51.9
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 3.9e-27 125.2 140 50.7
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 5.1e-27 124.8 185 41.1
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 8.7e-27 124.0 143 49.7
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.9e-26 122.9 131 51.1
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.5e-26 122.5 135 48.1
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 4.3e-26 121.7 130 47.7
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 4.3e-26 121.7 125 52.0
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 5.6e-26 121.3 134 51.5
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 9.6e-26 120.6 61 83.6
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 1.6e-25 119.8 127 52.8
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.8e-25 119.0 135 47.4
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 2.8e-25 119.0 109 56.9
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 2.8e-25 119.0 135 48.1
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 3.6e-25 118.6 143 48.3
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 4.8e-25 118.2 124 52.4
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 8.1e-25 117.5 136 50.0
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 2.4e-24 115.9 106 54.7
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 4.0e-24 115.2 96 59.4
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 4.0e-24 115.2 133 49.6
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 6.9e-24 114.4 129 48.1
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.2e-23 113.6 109 59.6
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.0e-23 112.8 134 49.3
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.3e-22 110.2 167 41.3
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 2.9e-22 109.0 91 56.0
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.9e-22 109.0 122 50.8
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 8.4e-22 107.5 114 56.1
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 1.1e-21 107.1 111 48.6
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 1.1e-21 107.1 111 48.6
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.1e-21 107.1 125 48.8
SalBow1G4992 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.4e-21 105.9 78 65.4
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 3.2e-21 105.5 107 49.5
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.2e-21 105.5 115 56.5
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.2e-21 105.5 115 56.5
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 3.2e-21 105.5 94 53.2
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.2e-21 105.1 62 72.6
SalBow1G0501 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.4e-21 104.8 78 64.1
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 7.1e-21 104.4 73 68.5
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.7e-20 102.4 129 50.4
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 4.6e-20 101.7 60 70.0
SalBow1G0857 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.6e-20 101.7 78 64.1
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.0e-19 100.5 133 47.4
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.8e-19 99.8 125 44.8
SalBow1G3820 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.9e-19 98.6 78 61.5
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 3.9e-19 98.6 109 51.4
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 8.7e-19 97.4 54 75.9
SalBow1G6351 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.3e-18 95.1 77 61.0
SalBow1G6948 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.4e-18 94.4 78 59.0
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 6.2e-17 91.3 74 62.2
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 4.0e-16 88.6 122 38.5
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.0e-15 86.3 132 43.9
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 4.5e-15 85.1 48 72.9
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 4.5e-15 85.1 114 45.6
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 4.5e-15 85.1 52 67.3
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 9.9e-15 84.0 50 68.0
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 3.8e-14 82.0 118 43.2
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 4.2e-13 78.6 55 65.5
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 5.5e-13 78.2 91 50.5
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 1.0e-11 73.9 82 48.8
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 1.3e-11 73.6 49 63.3
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 5.1e-11 71.6 100 42.0
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 6.7e-11 71.2 97 47.4
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 8.7e-11 70.9 106 50.0
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 5.6e-10 68.2 40 72.5
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.3e-09 67.0 86 44.2
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 4.0e-08 62.0 37 73.0
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 6.9e-08 61.2 50 54.0
CAN.G536.1 Capsicum annuum HOM05D006894 ORTHO05D000067 1.3e-06 57.0 51 49.0
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 1.3e-06 57.0 90 43.3
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 8.4e-06 54.3 36 66.7


User provided reference genes

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