Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.4e-179 632.1 324 100.0
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 5.8e-53 212.2 329 46.5
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 5.6e-48 195.7 342 40.9
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 7.3e-48 195.3 333 41.7
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 2.9e-44 183.3 303 40.9
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.4e-43 181.0 339 39.5
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 3.2e-43 179.9 302 45.0
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 2.5e-40 170.2 342 38.6
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.3e-40 169.5 341 38.1
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.1e-39 167.2 289 41.2
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 1.4e-35 154.5 284 42.3
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 7.1e-35 152.1 300 36.7
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.2e-34 151.4 331 37.2
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.1e-34 150.6 331 37.2
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.6e-34 149.4 315 36.2
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 7.9e-34 148.7 336 34.2
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 1.8e-33 147.5 255 42.0
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 7.4e-32 142.1 341 33.7
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 1.3e-31 141.4 335 34.3
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 2.1e-31 140.6 348 34.5
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 2.8e-31 140.2 308 36.4
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 8.2e-31 138.7 335 35.2
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 1.1e-30 138.3 354 34.5
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 1.4e-30 137.9 326 33.7
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 5.3e-30 136.0 347 34.9
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 6.9e-30 135.6 352 33.8
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.3e-28 131.3 345 32.8
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.2e-28 130.6 305 35.7
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.9e-28 130.2 305 35.7
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.9e-28 130.2 338 34.3
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 5.0e-28 129.4 331 33.8
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 5.0e-28 129.4 331 33.8
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 8.4e-28 128.6 326 34.4
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 1.1e-27 128.3 352 31.2
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 1.4e-27 127.9 350 33.1
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 1.4e-27 127.9 347 31.7
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 1.9e-27 127.5 346 33.5
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 1.9e-27 127.5 339 30.7
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 3.2e-27 126.7 348 32.5
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 5.5e-27 125.9 349 35.0
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 1.6e-26 124.4 349 30.1
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 2.7e-26 123.6 304 30.9
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 4.6e-26 122.9 341 35.2
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 4.6e-26 122.9 305 33.1
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 1.3e-25 121.3 296 35.8
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 1.3e-25 121.3 354 34.2
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.3e-25 121.3 339 30.4
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 3.0e-25 120.2 313 31.6
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 6.7e-25 119.0 316 32.0
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 8.7e-25 118.6 345 32.5
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 1.1e-24 118.2 339 31.6
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.1e-24 118.2 307 31.6
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 1.5e-24 117.9 339 31.6
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.3e-24 116.3 314 34.4
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 5.7e-24 115.9 303 33.3
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 7.4e-24 115.5 295 32.9
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 7.4e-24 115.5 351 34.2
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 9.7e-24 115.2 307 32.2
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.3e-23 114.8 314 34.1
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.2e-23 114.0 352 33.0
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 2.2e-23 114.0 314 34.1
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 2.8e-23 113.6 320 34.4
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 2.8e-23 113.6 303 31.0
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 6.3e-23 112.5 301 31.6
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 8.2e-23 112.1 310 32.6
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.8e-22 110.9 322 32.3
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 2.4e-22 110.5 294 32.7
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.4e-22 110.5 282 30.9
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 3.1e-22 110.2 305 30.2
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 3.1e-22 110.2 305 30.2
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 3.1e-22 110.2 305 30.2
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 3.1e-22 110.2 341 32.8
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 4.1e-22 109.8 301 32.6
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 4.1e-22 109.8 323 31.0
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 5.3e-22 109.4 278 35.6
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 5.3e-22 109.4 303 33.0
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 6.9e-22 109.0 241 32.4
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 6.9e-22 109.0 309 33.7
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 6.9e-22 109.0 291 32.6
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 1.2e-21 108.2 351 32.2
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 2.0e-21 107.5 312 30.4
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.0e-21 107.5 310 33.9
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 2.0e-21 107.5 324 32.1
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 3.4e-21 106.7 307 32.6
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 4.5e-21 106.3 309 30.1
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.5e-21 106.3 310 31.9
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 5.9e-21 105.9 306 30.7
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 1.0e-20 105.1 211 36.5
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 1.3e-20 104.8 280 29.6
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 2.9e-20 103.6 252 32.5
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 3.8e-20 103.2 295 32.2
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 8.5e-20 102.1 313 29.1
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 1.1e-19 101.7 308 32.1
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 1.4e-19 101.3 310 32.6
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 1.4e-19 101.3 285 30.9
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 2.5e-19 100.5 318 29.9
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 1.6e-18 97.8 308 31.5
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.7e-18 97.1 248 33.5
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 3.6e-18 96.7 307 29.0
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.6e-18 96.7 287 29.3
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 5.1e-17 92.8 292 28.8
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 6.7e-17 92.4 349 28.7
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 6.7e-17 92.4 210 34.3
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 8.8e-17 92.0 286 30.1
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 1.5e-16 91.3 295 27.8
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 2.5e-16 90.5 249 33.3
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.5e-16 90.5 304 31.2
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.3e-16 90.1 287 28.6
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 3.3e-16 90.1 176 38.1
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.3e-16 89.7 299 27.8
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 5.7e-16 89.4 334 29.3
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 7.4e-16 89.0 307 30.3
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 7.4e-16 89.0 227 32.2
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 1.7e-15 87.8 299 27.4
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 2.2e-15 87.4 287 30.3
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 2.8e-15 87.0 285 29.8
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 4.8e-15 86.3 303 29.7
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 6.3e-15 85.9 338 29.9
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.3e-15 85.9 288 27.4
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 8.2e-15 85.5 323 29.1
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 1.8e-14 84.3 288 31.2
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.8e-14 84.3 229 31.0
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 2.4e-14 84.0 305 26.2
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 2.4e-14 84.0 294 28.2
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 5.3e-14 82.8 297 26.6
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 5.3e-14 82.8 321 29.0
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 6.9e-14 82.4 313 28.1
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 1.2e-13 81.6 275 29.1
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 4.5e-13 79.7 172 35.5
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 7.7e-13 79.0 184 35.3
MSTRG.734 Avicennia marina HOM05D003448 ORTHO05D004028 1.0e-12 78.6 139 40.3
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 1.3e-12 78.2 323 27.6
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 1.3e-12 78.2 288 29.5
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 8.5e-12 75.5 320 27.8
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 2.5e-11 73.9 203 35.0
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 3.2e-11 73.6 219 29.7
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 3.2e-11 73.6 289 29.4
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 9.4e-11 72.0 284 26.8
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 3.6e-10 70.1 289 28.0
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 4.7e-10 69.7 106 40.6
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 4.7e-10 69.7 235 30.6
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 4.7e-10 69.7 298 27.2
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 6.1e-10 69.3 199 30.2
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 3.0e-09 67.0 308 26.0
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 6.7e-09 65.9 173 28.3
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 1.1e-08 65.1 277 26.0
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 1.5e-08 64.7 138 36.2
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 3.3e-08 63.5 162 30.9
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 4.4e-08 63.2 237 27.8
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 1.7e-07 61.2 148 33.1
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 2.8e-07 60.5 294 25.5
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.8e-07 60.5 115 37.4
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.8e-07 60.5 219 28.8
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 3.7e-07 60.1 102 40.2
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 3.7e-07 60.1 102 40.2
unitig_699.g19913 Utricularia gibba HOM05D003448 ORTHO05D004028 8.2e-07 58.9 117 32.5
Prupe.1G277700 Prunus persica HOM05D003448 ORTHO05D004028 3.1e-06 57.0 169 33.7
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 5.3e-06 56.2 137 35.0


User provided reference genes

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