Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 9.2e-240 833.2 431 100.0
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.9e-83 313.9 542 44.6
SGA_v2.0_scaffold36G14460 Striga asiatica HOM05D003672 ORTHO05D004121 2.7e-37 160.6 404 37.4
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 2.3e-36 157.5 619 30.4
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 2.1e-34 151.0 494 33.2
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 4.7e-34 149.8 550 32.0
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 3.1e-33 147.1 521 32.1
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 5.2e-33 146.4 287 40.1
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.6e-32 144.1 297 38.7
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 6.4e-31 139.4 428 31.1
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 3.2e-30 137.1 365 36.7
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 2.0e-29 134.4 384 35.4
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 2.0e-29 134.4 371 35.3
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 6.0e-29 132.9 398 32.7
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.1e-27 128.6 349 33.8
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.5e-27 127.5 416 32.0
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.3e-27 127.1 359 35.1
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.3e-27 126.7 359 34.8
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.2e-26 125.2 359 34.5
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 6.2e-26 122.9 312 34.9
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 8.1e-26 122.5 356 33.4
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.1e-25 122.1 448 30.6
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 2.3e-25 120.9 275 38.2
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 2.3e-25 120.9 315 35.6
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 6.8e-25 119.4 245 40.4
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 8.9e-25 119.0 413 30.8
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 1.2e-24 118.6 248 37.9
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.2e-24 118.6 275 37.8
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.2e-24 118.6 390 31.5
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 2.0e-24 117.9 345 33.6
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 2.0e-24 117.9 332 33.1
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 2.6e-24 117.5 248 37.5
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 2.6e-24 117.5 460 32.0
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 3.4e-24 117.1 529 30.1
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 3.4e-24 117.1 292 34.9
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 4.4e-24 116.7 647 26.1
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 9.8e-24 115.5 289 36.3
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 9.8e-24 115.5 424 32.1
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 9.8e-24 115.5 219 40.6
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 1.3e-23 115.2 399 31.6
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 1.7e-23 114.8 416 29.8
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 2.2e-23 114.4 357 32.2
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.9e-23 114.0 424 30.7
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 2.9e-23 114.0 275 37.5
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.9e-23 114.0 424 30.9
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 2.9e-23 114.0 552 27.4
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 3.7e-23 113.6 408 30.9
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 4.9e-23 113.2 245 39.2
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 6.4e-23 112.8 430 30.7
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 6.4e-23 112.8 226 37.6
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 8.3e-23 112.5 253 37.9
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 8.3e-23 112.5 409 29.3
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.4e-22 111.7 386 32.6
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 1.4e-22 111.7 246 37.0
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.4e-22 111.7 422 31.8
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.4e-22 111.7 481 29.7
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 4.1e-22 110.2 223 39.9
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 5.4e-22 109.8 410 31.0
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 9.2e-22 109.0 225 36.0
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 2.1e-21 107.8 290 32.4
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 2.1e-21 107.8 323 31.3
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 2.1e-21 107.8 210 39.5
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.7e-21 107.5 390 32.1
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 2.7e-21 107.5 408 29.4
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 2.7e-21 107.5 335 31.3
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 2.7e-21 107.5 341 29.9
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.5e-21 107.1 389 31.4
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 4.6e-21 106.7 245 34.7
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 6.0e-21 106.3 356 32.3
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 7.8e-21 105.9 429 28.0
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 7.8e-21 105.9 245 34.3
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 1.0e-20 105.5 302 31.5
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.0e-20 105.5 386 31.1
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 1.3e-20 105.1 282 34.0
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.3e-20 105.1 317 30.9
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.7e-20 104.8 306 30.7
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 1.7e-20 104.8 261 36.4
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.7e-20 104.8 460 28.9
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.7e-20 104.8 247 35.6
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 2.3e-20 104.4 251 36.7
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 2.3e-20 104.4 256 35.2
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 2.3e-20 104.4 207 38.2
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 3.9e-20 103.6 313 31.6
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 3.9e-20 103.6 206 37.9
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 5.1e-20 103.2 220 36.4
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 8.6e-20 102.4 247 34.4
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.9e-19 101.3 288 34.0
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 2.5e-19 100.9 390 31.3
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 3.3e-19 100.5 206 37.9
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 3.3e-19 100.5 242 36.4
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 7.3e-19 99.4 337 30.6
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 7.3e-19 99.4 375 30.7
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 7.3e-19 99.4 254 35.4
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 9.5e-19 99.0 305 31.5
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 9.5e-19 99.0 350 32.3
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 9.5e-19 99.0 374 29.7
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.2e-18 98.6 245 33.1
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.6e-18 98.2 339 32.2
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 1.6e-18 98.2 241 36.1
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 2.1e-18 97.8 416 28.4
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 2.1e-18 97.8 379 28.8
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 2.8e-18 97.4 322 29.5
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 2.8e-18 97.4 357 28.3
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 4.7e-18 96.7 206 37.9
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 6.2e-18 96.3 215 35.8
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 6.2e-18 96.3 348 29.6
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 8.1e-18 95.9 382 30.1
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 8.1e-18 95.9 219 37.4
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 8.1e-18 95.9 249 35.3
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 1.4e-17 95.1 436 27.1
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.8e-17 94.7 647 24.6
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.8e-17 94.7 284 34.2
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 2.3e-17 94.4 309 33.0
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 5.2e-17 93.2 518 26.1
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 5.2e-17 93.2 269 33.1
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 5.2e-17 93.2 367 28.6
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 6.8e-17 92.8 379 29.3
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.2e-16 92.0 266 32.3
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.2e-16 92.0 250 36.8
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 1.2e-16 92.0 360 30.0
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 1.5e-16 91.7 248 34.7
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 2.0e-16 91.3 297 29.6
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 2.0e-16 91.3 677 24.5
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 2.6e-16 90.9 323 31.0
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 3.4e-16 90.5 340 30.3
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 3.4e-16 90.5 355 28.7
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 5.8e-16 89.7 596 26.2
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 5.8e-16 89.7 445 26.7
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 5.8e-16 89.7 302 32.5
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 7.6e-16 89.4 400 29.0
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 9.9e-16 89.0 372 28.8
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.3e-15 88.6 376 29.3
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.3e-15 88.6 355 27.6
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 2.2e-15 87.8 413 28.3
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 2.9e-15 87.4 359 27.9
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 4.9e-15 86.7 264 30.3
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 6.4e-15 86.3 287 32.1
MSTRG.7745 Avicennia marina HOM05D003672 ORTHO05D004121 6.4e-15 86.3 110 48.2
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 1.4e-14 85.1 284 30.6
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 1.9e-14 84.7 300 29.0
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 2.4e-14 84.3 218 33.9
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 3.2e-14 84.0 248 30.2
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 3.2e-14 84.0 440 27.0
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 4.1e-14 83.6 357 28.0
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 4.1e-14 83.6 416 26.7
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 4.1e-14 83.6 238 31.5
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 4.1e-14 83.6 433 27.0
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 1.2e-13 82.0 273 32.6
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 2.1e-13 81.3 206 33.0
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 2.1e-13 81.3 228 31.6
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 2.7e-13 80.9 205 33.2
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 3.5e-13 80.5 208 34.1
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 4.6e-13 80.1 218 36.2
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.0e-12 79.0 327 29.7
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.0e-12 79.0 225 34.2
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 1.7e-12 78.2 245 30.6
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 3.0e-12 77.4 513 25.0
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.9e-12 77.0 447 25.5
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 3.9e-12 77.0 283 29.7
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 6.6e-12 76.3 397 26.4
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 8.6e-12 75.9 392 26.3
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.5e-11 75.1 273 30.4
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 3.6e-10 70.5 396 25.8
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 6.2e-10 69.7 240 30.4
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.8e-09 68.2 316 29.1
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 3.1e-09 67.4 215 33.0
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 8.9e-09 65.9 466 26.4
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 8.9e-09 65.9 262 28.6
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 3.4e-08 63.9 144 41.7
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 3.4e-08 63.9 127 38.6
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 7.6e-08 62.8 288 27.8
Thecc.09G016200 Theobroma cacao HOM05D005497 ORTHO05D006733 7.6e-08 62.8 198 29.8
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.3e-07 62.0 473 24.9
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 1.7e-07 61.6 117 40.2
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.2e-07 61.2 503 22.3
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 2.9e-07 60.8 70 47.1
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 2.9e-07 60.8 73 47.9
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 4.9e-07 60.1 296 27.4
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 4.9e-07 60.1 188 30.3
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 8.4e-07 59.3 204 29.9
Atru.chr7.2544 Acer truncatum HOM05D005497 ORTHO05D006733 4.2e-06 57.0 190 31.6
COL.COLO4_18946 Corchorus olitorius HOM05D001770 ORTHO05D001822 5.4e-06 56.6 186 29.6
Duzib168G1440 Durio zibethinus HOM05D005497 ORTHO05D006733 7.1e-06 56.2 189 27.5
Gohir.A05G059400 Gossypium hirsutum HOM05D005497 ORTHO05D006733 7.1e-06 56.2 194 28.9
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 9.3e-06 55.8 84 42.9


User provided reference genes

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