Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.9e-131 471.1 228 100.0
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.6e-116 422.2 224 89.7
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 4.4e-116 421.4 223 90.1
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 9.9e-116 420.2 226 88.9
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 6.4e-115 417.5 226 86.3
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 1.4e-114 416.4 224 87.1
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.4e-114 416.4 224 87.1
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 4.2e-114 414.8 221 87.3
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 9.2e-114 413.7 224 85.3
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 9.2e-114 413.7 224 86.6
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 3.5e-113 411.8 219 87.7
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 3.5e-113 411.8 224 86.2
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 6.0e-113 411.0 224 85.7
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 7.8e-113 410.6 224 85.3
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.0e-112 410.2 224 85.7
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.3e-112 409.8 224 86.2
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.7e-112 409.5 224 86.2
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 2.3e-112 409.1 221 86.4
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 2.3e-112 409.1 225 84.9
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.3e-112 409.1 279 74.2
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.3e-112 409.1 224 86.6
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 3.0e-112 408.7 224 86.6
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 3.0e-112 408.7 223 86.5
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 3.9e-112 408.3 223 86.5
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 3.9e-112 408.3 251 78.1
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 5.1e-112 407.9 224 85.7
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 5.1e-112 407.9 224 88.4
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.1e-112 407.9 224 85.7
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.1e-111 406.8 224 86.2
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 85.7
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 85.3
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.9e-111 406.0 224 86.2
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 3.3e-111 405.2 224 84.8
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 3.3e-111 405.2 224 85.7
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 4.3e-111 404.8 225 84.4
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 5.6e-111 404.4 221 85.5
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 7.3e-111 404.1 224 84.8
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 7.3e-111 404.1 224 84.4
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 9.6e-111 403.7 223 84.3
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 9.6e-111 403.7 227 83.7
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.3e-110 403.3 224 83.9
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.1e-110 402.5 221 85.1
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.1e-110 402.5 224 85.7
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 2.8e-110 402.1 224 85.7
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.8e-110 402.1 224 83.5
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 3.6e-110 401.7 221 86.4
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 4.8e-110 401.4 218 85.8
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 6.2e-110 401.0 221 84.6
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.2e-110 401.0 222 83.3
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 6.2e-110 401.0 226 82.3
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 6.2e-110 401.0 224 83.9
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 8.1e-110 400.6 221 84.2
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 8.1e-110 400.6 223 84.3
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.1e-109 400.2 224 84.8
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.1e-109 400.2 224 83.9
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.4e-109 399.8 224 84.8
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.8e-109 399.4 223 83.4
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.4e-109 399.1 228 83.8
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 2.4e-109 399.1 224 83.9
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.4e-109 399.1 221 86.0
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 3.1e-109 398.7 222 82.4
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 3.1e-109 398.7 222 82.4
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 3.1e-109 398.7 224 83.9
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 4.0e-109 398.3 224 84.8
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.0e-109 398.3 224 84.8
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 5.3e-109 397.9 224 83.9
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 5.3e-109 397.9 225 84.4
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 6.9e-109 397.5 237 81.4
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 9.0e-109 397.1 224 83.5
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.2e-108 396.7 226 81.4
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.2e-108 396.7 224 83.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.2e-108 396.7 244 78.3
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.0e-108 396.0 215 84.7
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.0e-108 396.0 223 83.0
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 2.0e-108 396.0 224 84.4
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.4e-108 395.2 222 82.0
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 3.4e-108 395.2 224 82.6
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 7.6e-108 394.0 224 83.5
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.3e-107 393.3 221 83.3
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 1.7e-107 392.9 224 81.7
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.7e-107 392.9 224 82.6
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 2.9e-107 392.1 224 82.1
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 4.9e-107 391.3 220 83.2
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 8.4e-107 390.6 224 81.2
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 8.4e-107 390.6 221 81.9
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 82.7
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 82.7
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 82.7
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.9e-106 389.4 224 81.2
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 4.2e-106 388.3 224 81.7
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 4.2e-106 388.3 224 81.2
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 5.4e-106 387.9 220 82.7
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 5.4e-106 387.9 220 82.7
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 9.3e-106 387.1 224 79.9
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 2.7e-105 385.6 224 82.1
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 3.5e-105 385.2 224 80.8
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 3.5e-105 385.2 220 81.8
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 4.6e-105 384.8 220 80.9
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 6.0e-105 384.4 223 80.3
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 6.0e-105 384.4 220 81.4
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 6.0e-105 384.4 221 81.0
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 7.8e-105 384.0 224 80.4
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 2.3e-104 382.5 220 81.4
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 2.3e-104 382.5 224 80.8
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.9e-104 381.7 220 80.5
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 8.7e-104 380.6 224 78.6
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.1e-103 380.2 220 81.4
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.5e-103 379.8 224 79.9
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 1.5e-103 379.8 210 84.8
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 4.3e-103 378.3 220 80.9
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 4.3e-103 378.3 220 80.9
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 4.3e-103 378.3 223 80.3
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 7.3e-103 377.5 210 84.3
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 4.8e-102 374.8 224 81.2
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.8e-101 372.9 216 79.6
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.2e-99 365.9 216 78.2
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 3.5e-97 358.6 219 72.6
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 5.6e-95 351.3 205 81.5
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.2e-94 347.8 229 72.9
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.2e-92 343.6 222 70.3
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.3e-88 330.1 221 70.6
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 1.2e-84 317.0 216 65.7
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.2e-84 317.0 218 66.1
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.9e-79 299.7 153 90.8
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.9e-79 299.7 163 89.0
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 2.5e-79 299.3 164 88.4
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.8e-75 285.4 162 79.0
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 9.4e-74 280.8 169 75.1
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 2.8e-70 269.2 215 59.1
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.8e-70 268.5 163 79.1
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 4.8e-62 241.9 131 84.0
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 5.3e-61 238.4 213 53.1
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 6.5e-59 231.5 211 55.5
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 8.0e-57 224.6 128 79.7
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 3.0e-56 222.6 111 94.6
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 7.4e-55 218.0 215 48.4
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.7e-51 206.8 148 73.6
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 7.2e-50 201.4 112 80.4
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.5e-47 193.7 115 76.5
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.9e-43 179.5 130 59.2
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 4.1e-37 159.1 88 79.5
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 1.2e-36 157.5 103 72.8
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 3.3e-34 149.4 212 37.7
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 3.6e-33 146.0 97 80.4
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.4e-29 134.0 66 92.4
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 3.2e-29 132.9 134 49.3
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.0e-27 127.9 75 82.7
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.9e-26 123.6 78 82.1
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 5.6e-26 122.1 61 90.2
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 4.7e-25 119.0 108 53.7
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.1e-25 118.6 70 75.7
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.9e-22 109.8 61 91.8
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 9.2e-21 104.8 64 82.8
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 3.5e-20 102.8 61 86.9
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 4.6e-20 102.4 54 87.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.9e-18 97.1 65 76.9
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.7e-17 92.4 64 70.3
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.1e-16 89.7 128 46.9
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 3.4e-15 86.3 54 83.3
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 4.1e-13 79.3 100 44.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.7e-12 76.6 51 72.5
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.1e-09 67.0 39 74.4
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.6e-07 60.1 35 80.0
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 7.6e-07 58.5 43 72.1


User provided reference genes

Program Settings