Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 4.4e-52 207.6 99 100.0
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 1.4e-21 106.3 107 56.1
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 7.8e-17 90.5 105 52.4
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 3.0e-16 88.6 107 51.4
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 1.1e-15 86.7 110 51.8
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.6e-14 82.8 64 60.9
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 8.1e-14 80.5 128 43.0
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.4e-13 79.7 107 50.5
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.8e-13 79.3 96 51.0
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 3.1e-13 78.6 111 45.9
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 4.0e-13 78.2 108 44.4
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 6.8e-13 77.4 112 47.3
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 8.9e-13 77.0 84 48.8
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.2e-12 76.6 117 45.3
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 1.5e-12 76.3 111 46.8
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 2.0e-12 75.9 104 49.0
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 2.6e-12 75.5 110 45.5
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 5.8e-12 74.3 108 45.4
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 7.5e-12 73.9 57 66.7
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 7.5e-12 73.9 57 66.7
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 7.5e-12 73.9 111 43.2
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 7.5e-12 73.9 104 47.1
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 7.5e-12 73.9 63 55.6
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 7.5e-12 73.9 93 47.3
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 7.5e-12 73.9 114 41.2
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 7.5e-12 73.9 106 46.2
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 9.9e-12 73.6 105 45.7
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.9e-12 73.6 67 58.2
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 9.9e-12 73.6 117 41.0
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.3e-11 73.2 58 62.1
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 2.2e-11 72.4 118 43.2
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 2.9e-11 72.0 112 43.8
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.9e-11 72.0 67 56.7
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 2.9e-11 72.0 100 46.0
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 2.9e-11 72.0 99 45.5
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 2.9e-11 72.0 68 55.9
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 2.9e-11 72.0 107 43.0
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 3.7e-11 71.6 110 39.1
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.7e-11 71.6 110 43.6
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 4.9e-11 71.2 92 46.7
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 4.9e-11 71.2 60 63.3
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 4.9e-11 71.2 60 56.7
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.4e-11 70.9 95 47.4
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.4e-11 70.9 93 46.2
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 8.3e-11 70.5 97 42.3
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 8.3e-11 70.5 134 41.0
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.4e-10 69.7 61 59.0
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.4e-10 69.7 115 44.3
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.4e-10 69.7 60 61.7
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.4e-10 69.7 57 61.4
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 1.4e-10 69.7 66 53.0
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 1.4e-10 69.7 110 43.6
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.4e-10 69.7 105 46.7
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.9e-10 69.3 57 63.2
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 1.9e-10 69.3 95 48.4
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 2.4e-10 68.9 116 42.2
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 3.2e-10 68.6 57 61.4
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 5.4e-10 67.8 118 42.4
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 5.4e-10 67.8 115 42.6
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 5.4e-10 67.8 109 44.0
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 5.4e-10 67.8 87 48.3
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 7.1e-10 67.4 72 52.8
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 7.1e-10 67.4 99 49.5
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 7.1e-10 67.4 93 45.2
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 7.1e-10 67.4 62 58.1
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 9.2e-10 67.0 109 45.0
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.2e-09 66.6 86 43.0
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 1.2e-09 66.6 116 41.4
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.2e-09 66.6 114 43.0
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 1.2e-09 66.6 98 44.9
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.6e-09 66.2 67 56.7
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 1.6e-09 66.2 107 47.7
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 1.6e-09 66.2 105 44.8
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 2.1e-09 65.9 109 43.1
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 2.7e-09 65.5 102 44.1
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 2.7e-09 65.5 102 44.1
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 2.7e-09 65.5 54 61.1
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 2.7e-09 65.5 114 40.4
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 2.7e-09 65.5 87 47.1
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 3.5e-09 65.1 94 46.8
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 3.5e-09 65.1 94 46.8
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 4.6e-09 64.7 116 39.7
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 6.0e-09 64.3 92 46.7
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 6.0e-09 64.3 116 42.2
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 6.0e-09 64.3 75 45.3
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.0e-08 63.5 97 44.3
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.0e-08 63.5 99 41.4
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.3e-08 63.2 112 41.1
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.3e-08 62.4 97 47.4
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 2.3e-08 62.4 89 46.1
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 3.0e-08 62.0 104 45.2
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 3.0e-08 62.0 101 38.6
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 5.1e-08 61.2 108 39.8
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.1e-08 61.2 108 38.9
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.1e-08 61.2 108 39.8
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 6.6e-08 60.8 109 40.4
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 8.6e-08 60.5 41 68.3
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 8.6e-08 60.5 108 38.9
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 8.6e-08 60.5 105 41.0
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 1.1e-07 60.1 69 44.9
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 1.1e-07 60.1 112 37.5
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 1.1e-07 60.1 116 37.1
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.9e-07 59.3 105 39.0
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.9e-07 59.3 105 38.1
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 1.9e-07 59.3 112 41.1
CARHR039040 Cardamine hirsuta HOM05D012335 ORTHO05D014421 2.5e-07 58.9 84 45.2
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 2.5e-07 58.9 72 50.0
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 2.5e-07 58.9 59 52.5
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 3.3e-07 58.5 106 39.6
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.3e-07 58.2 114 40.4
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 4.3e-07 58.2 102 41.2
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 4.3e-07 58.2 117 40.2
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 4.3e-07 58.2 92 38.0
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 4.3e-07 58.2 92 42.4
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 5.6e-07 57.8 119 41.2
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 7.3e-07 57.4 106 43.4
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 7.3e-07 57.4 111 40.5
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.2e-06 56.6 102 40.2
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 1.6e-06 56.2 72 45.8
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.6e-06 56.2 110 33.6
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 2.8e-06 55.5 46 60.9
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 2.8e-06 55.5 46 60.9
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 2.8e-06 55.5 46 60.9
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 2.8e-06 55.5 109 35.8
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 4.7e-06 54.7 111 35.1
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 4.7e-06 54.7 103 37.9
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 6.2e-06 54.3 30 76.7
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 6.2e-06 54.3 105 37.1
Os02g0324400 Oryza sativa ssp. japonica HOM05D034298 ORTHO05D006915 6.2e-06 54.3 41 58.5
Thhalv10012120m.g Eutrema salsugineum HOM05D012335 ORTHO05D014421 8.1e-06 53.9 108 39.8
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.1e-06 53.9 99 39.4
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.1e-06 53.9 111 36.0


User provided reference genes

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