Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01076 Erythranthe guttata HOM05D006290 ORTHO05D007734 2.6e-56 221.9 113 100.0
MSTRG.826 Avicennia marina HOM05D006290 ORTHO05D007734 2.6e-32 142.1 113 67.3
SGA_v2.0_scaffold124G33547 Striga asiatica HOM05D006290 ORTHO05D007734 5.6e-27 124.4 114 62.3
MSTRG.13517 Avicennia marina HOM05D006290 ORTHO05D007734 2.1e-26 122.5 114 58.8
Oeu033294.1 Olea europaea HOM05D006290 ORTHO05D007734 5.2e-25 117.9 123 55.3
Nitab4.5_0001914g0020 Nicotiana tabacum HOM05D006290 ORTHO05D007734 9.5e-19 97.1 118 49.2
Dinv21105 Davidia involucrata HOM05D001580 ORTHO05D001517 1.2e-18 96.7 112 50.0
Peaxi162Scf00004g01813 Petunia axillaris HOM05D006290 ORTHO05D007734 1.2e-18 96.7 84 60.7
Oeu020586.1 Olea europaea HOM05D006290 ORTHO05D007734 6.2e-18 94.4 103 53.4
Hma1.2p1_3293F.1_g334960 Hydrangea macrophylla HOM05D006290 ORTHO05D007734 1.1e-17 93.6 108 50.9
DCAR_007237 Daucus carota HOM05D006290 ORTHO05D007734 3.1e-17 92.0 97 56.7
Sabra10G0096300 Salix brachista HOM05D006290 ORTHO05D007734 8.9e-17 90.5 118 49.2
vmacro10549 Vaccinium macrocarpon HOM05D006290 ORTHO05D007734 1.5e-16 89.7 66 72.7
Manes.14G100600 Manihot esculenta HOM05D006290 ORTHO05D007734 2.0e-16 89.4 103 50.5
Potri.010G126800 Populus trichocarpa HOM05D006290 ORTHO05D007734 3.4e-16 88.6 119 47.1
Actinidia16641 Actinidia chinensis HOM05D006290 ORTHO05D007734 9.8e-16 87.0 90 53.3
Gohir.D13G071500 Gossypium hirsutum HOM05D006290 ORTHO05D007734 9.8e-16 87.0 111 44.1
Gorai.013G081900 Gossypium raimondii HOM05D006290 ORTHO05D007734 9.8e-16 87.0 111 44.1
DCAR_023668 Daucus carota HOM05D000325 ORTHO05D002981 1.3e-15 86.7 76 61.8
SalBow8G3983 Salvia bowleyana HOM05D006290 ORTHO05D007734 2.9e-15 85.5 69 65.2
arahy.Tifrunner.gnm1.ann1.89WS3K Arachis hypogaea HOM05D006290 ORTHO05D007734 3.7e-15 85.1 121 45.5
Gohir.A13G054000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 4.9e-15 84.7 111 43.2
Atru.chr11.1291 Acer truncatum HOM05D006290 ORTHO05D007734 8.3e-15 84.0 96 51.0
arahy.Tifrunner.gnm1.ann1.N6V5UD Arachis hypogaea HOM05D006290 ORTHO05D007734 8.3e-15 84.0 121 44.6
Glyma.01G082500 Glycine max HOM05D006290 ORTHO05D007734 1.1e-14 83.6 114 46.5
QL01p043858 Quercus lobata HOM05D006290 ORTHO05D007734 1.1e-14 83.6 93 52.7
Gorai.008G184100 Gossypium raimondii HOM05D006290 ORTHO05D007734 1.4e-14 83.2 74 52.7
HanXRQChr16g0529651 Helianthus annuus HOM05D006290 ORTHO05D007734 2.4e-14 82.4 60 70.0
Nitab4.5_0003285g0030 Nicotiana tabacum HOM05D006290 ORTHO05D007734 2.4e-14 82.4 113 44.2
ECA234G1725 Erigeron canadensis HOM05D006290 ORTHO05D007734 4.1e-14 81.6 98 46.9
Lj2g0005219 Lotus japonicus HOM05D006290 ORTHO05D007734 4.1e-14 81.6 94 48.9
Thecc.02G357300 Theobroma cacao HOM05D006290 ORTHO05D007734 4.1e-14 81.6 70 60.0
TWI75G0318 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 4.1e-14 81.6 94 52.1
Medtr1g111150 Medicago truncatula HOM05D006290 ORTHO05D007734 5.4e-14 81.3 105 45.7
Duzib251G0521 Durio zibethinus HOM05D006290 ORTHO05D007734 1.6e-13 79.7 118 42.4
Glyma.08G263700 Glycine max HOM05D006290 ORTHO05D007734 1.6e-13 79.7 108 47.2
Glyma.10G275300 Glycine max HOM05D006290 ORTHO05D007734 2.0e-13 79.3 113 45.1
Gohir.A12G168000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 3.5e-13 78.6 90 48.9
Gohir.D12G171600 Gossypium hirsutum HOM05D006290 ORTHO05D007734 3.5e-13 78.6 74 52.7
Lj5g0001389 Lotus japonicus HOM05D006290 ORTHO05D007734 3.5e-13 78.6 74 54.1
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 4.6e-13 78.2 80 53.8
FvH4_4g27620 Fragaria vesca HOM05D006290 ORTHO05D007734 4.6e-13 78.2 95 49.5
Potri.008G119300 Populus trichocarpa HOM05D006290 ORTHO05D007734 4.6e-13 78.2 93 49.5
Cfa018610 Carpinus fangiana HOM05D006290 ORTHO05D007734 6.0e-13 77.8 92 50.0
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 7.8e-13 77.4 127 42.5
Glyma.20G114400 Glycine max HOM05D006290 ORTHO05D007734 7.8e-13 77.4 87 51.7
Solyc05g150121.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 7.8e-13 77.4 73 50.7
GSVIVG01011914001 Vitis vinifera HOM05D006290 ORTHO05D007734 7.8e-13 77.4 103 46.6
Ca_11183_v3 Cicer arietinum L. HOM05D006290 ORTHO05D007734 1.0e-12 77.0 97 44.3
Haze_17464 Corylus avellana HOM05D006290 ORTHO05D007734 1.0e-12 77.0 82 53.7
MD13G1043600 Malus domestica HOM05D006290 ORTHO05D007734 1.0e-12 77.0 95 50.5
Nn4g23807 Nelumbo nucifera HOM05D006290 ORTHO05D007734 1.0e-12 77.0 84 48.8
TPR.G38332 Trifolium pratense HOM05D006290 ORTHO05D007734 1.0e-12 77.0 91 48.4
TPR.G26319 Trifolium pratense HOM05D006290 ORTHO05D007734 1.3e-12 76.6 122 38.5
CANSAT64G2445 Cannabis sativa HOM05D006290 ORTHO05D007734 1.7e-12 76.3 93 46.2
Lsat_1_v5_gn_4_18480 Lactuca sativa HOM05D006290 ORTHO05D007734 3.0e-12 75.5 58 65.5
SalBow8G5082 Salvia bowleyana HOM05D006290 ORTHO05D007734 3.9e-12 75.1 74 55.4
Aa31sc179G60 Aethionema arabicum HOM05D006290 ORTHO05D007734 5.0e-12 74.7 91 48.4
THA.LOC104821947 Tarenaya hassleriana HOM05D006290 ORTHO05D007734 6.6e-12 74.3 93 48.4
AL2G27490 Arabidopsis lyrata HOM05D006290 ORTHO05D007734 8.6e-12 73.9 94 46.8
Phvul.007G026200 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 8.6e-12 73.9 116 43.1
TWI79G1749 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 8.6e-12 73.9 94 46.8
ECA246G4651 Erigeron canadensis HOM05D006290 ORTHO05D007734 1.1e-11 73.6 58 60.3
Eucgr.G02333 Eucalyptus grandis HOM05D006290 ORTHO05D007734 1.1e-11 73.6 63 58.7
HanXRQChr17g0567961 Helianthus annuus HOM05D006290 ORTHO05D007734 1.1e-11 73.6 68 58.8
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.1e-11 73.6 58 63.8
C06p37490 Brassica napus HOM05D006290 ORTHO05D007734 1.5e-11 73.2 85 44.7
BolC6t38851H Brassica oleracea HOM05D006290 ORTHO05D007734 1.5e-11 73.2 85 44.7
BraA07t30820Z Brassica rapa HOM05D006290 ORTHO05D007734 1.5e-11 73.2 85 44.7
AT1G68585 Arabidopsis thaliana HOM05D006290 ORTHO05D007734 1.9e-11 72.8 94 45.7
A07p31920 Brassica napus HOM05D006290 ORTHO05D007734 1.9e-11 72.8 85 44.7
CiPaw.15G083600 Carya illinoinensis HOM05D006290 ORTHO05D007734 2.5e-11 72.4 83 50.6
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 2.5e-11 72.4 75 53.3
Duzib268G1644 Durio zibethinus HOM05D006290 ORTHO05D007734 2.5e-11 72.4 70 54.3
Lalb_Chr17g0342051 Lupinus albus HOM05D006290 ORTHO05D007734 2.5e-11 72.4 99 42.4
Phvul.003G034800 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 2.5e-11 72.4 113 44.2
PGR119G1521 Punica granatum HOM05D006290 ORTHO05D007734 2.5e-11 72.4 103 42.7
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 2.5e-11 72.4 87 42.5
Carub.0002s1512 Capsella rubella HOM05D006290 ORTHO05D007734 3.3e-11 72.0 94 46.8
Medtr5g055200 Medicago truncatula HOM05D006290 ORTHO05D007734 3.3e-11 72.0 93 45.2
BcaB05g24400 Brassica carinata HOM05D006290 ORTHO05D007734 5.6e-11 71.2 66 50.0
C02p25020 Brassica napus HOM05D006290 ORTHO05D007734 5.6e-11 71.2 69 49.3
BolC2t08586H Brassica oleracea HOM05D006290 ORTHO05D007734 5.6e-11 71.2 69 49.3
BraA02t06584Z Brassica rapa HOM05D006290 ORTHO05D007734 5.6e-11 71.2 69 49.3
Psat6g229000 Pisum sativum HOM05D006290 ORTHO05D007734 5.6e-11 71.2 91 47.3
A02p15210 Brassica napus HOM05D006290 ORTHO05D007734 7.3e-11 70.9 68 50.0
Lalb_Chr21g0309011 Lupinus albus HOM05D006290 ORTHO05D007734 7.3e-11 70.9 94 44.7
Thhalv10019326m.g Eutrema salsugineum HOM05D006290 ORTHO05D007734 9.5e-11 70.5 87 44.8
CARHR061380 Cardamine hirsuta HOM05D006290 ORTHO05D007734 2.1e-10 69.3 79 48.1
ClCG05G022830 Citrullus lanatus HOM05D006290 ORTHO05D007734 2.1e-10 69.3 108 39.8
BcaC08g45955 Brassica carinata HOM05D006290 ORTHO05D007734 3.6e-10 68.6 85 45.9
HanXRQChr15g0477181 Helianthus annuus HOM05D006290 ORTHO05D007734 3.6e-10 68.6 95 44.2
HanXRQChr17g0552191 Helianthus annuus HOM05D006290 ORTHO05D007734 3.6e-10 68.6 57 56.1
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 4.7e-10 68.2 85 43.5
CsaV3_5G034200 Cucumis sativus L. HOM05D006290 ORTHO05D007734 6.2e-10 67.8 88 45.5
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 6.2e-10 67.8 92 46.7
BcaB03g15431 Brassica carinata HOM05D006290 ORTHO05D007734 8.1e-10 67.4 85 44.7
EL10Ac6g14437 Beta vulgaris HOM05D006290 ORTHO05D007734 1.8e-09 66.2 93 46.2
BcaC03g14971 Brassica carinata HOM05D006290 ORTHO05D007734 1.8e-09 66.2 69 49.3
FAN12G1280 Fragaria x ananassa HOM05D006290 ORTHO05D007734 1.8e-09 66.2 119 38.7
Lalb_Chr10g0099941 Lupinus albus HOM05D006290 ORTHO05D007734 2.3e-09 65.9 80 50.0
Sed0010442 Sechium edule HOM05D006290 ORTHO05D007734 4.0e-09 65.1 90 46.7
unitig_26.g10264 Utricularia gibba HOM05D000483 ORTHO05D000158 4.0e-09 65.1 57 56.1
Ciclev10033212m.g Citrus clementina HOM05D006290 ORTHO05D007734 5.2e-09 64.7 52 65.4
Hund05756 Selenicereus undatus HOM05D006290 ORTHO05D007734 1.5e-08 63.2 63 49.2
Aqoxy3G00325 Aquilegia oxysepala HOM05D006290 ORTHO05D007734 2.0e-08 62.8 107 37.4
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.4e-08 61.6 126 37.3
Peaxi162Scf00634g00115 Petunia axillaris HOM05D006290 ORTHO05D007734 5.8e-08 61.2 83 44.6
Sc14g0007550 Simmondsia chinensis HOM05D006290 ORTHO05D007734 5.8e-08 61.2 89 42.7
Solyc12g150113.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 7.5e-08 60.8 86 41.9
Sopen12g017530 Solanum pennellii HOM05D006290 ORTHO05D007734 7.5e-08 60.8 86 41.9
Migut.I00370 Erythranthe guttata HOM05D006290 ORTHO05D007734 1.3e-07 60.1 87 44.8
Sp5g23690 Schrenkiella parvula HOM05D006290 ORTHO05D007734 1.3e-07 60.1 68 48.5
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.7e-07 59.7 126 36.5
Manes.06G069950 Manihot esculenta HOM05D006290 ORTHO05D007734 2.9e-07 58.9 78 43.6
PGSC0003DMG400021769 Solanum tuberosum HOM05D006290 ORTHO05D007734 2.9e-07 58.9 86 40.7
CAN.G257.59 Capsicum annuum HOM05D006290 ORTHO05D007734 3.7e-07 58.5 84 40.5
AUR62002889 Chenopodium quinoa HOM05D006290 ORTHO05D007734 3.7e-07 58.5 72 44.4
CiPaw.16G064000 Carya illinoinensis HOM05D006290 ORTHO05D007734 4.9e-07 58.2 40 67.5
VMungo0720G2407 Vigna mungo HOM05D006290 ORTHO05D007734 1.4e-06 56.6 68 45.6
MBI12_g30235_MAGBIO Magnolia biondii HOM05D006290 ORTHO05D007734 1.9e-06 56.2 110 34.5
MELO3C012234.2 Cucumis melo HOM05D006290 ORTHO05D007734 3.2e-06 55.5 42 57.1
Sed0022191 Sechium edule HOM05D006290 ORTHO05D007734 3.2e-06 55.5 73 46.6
Cc04_g07230 Coffea canephora HOM05D006290 ORTHO05D007734 4.1e-06 55.1 86 41.9
MD16G1044400 Malus domestica HOM05D006290 ORTHO05D007734 7.1e-06 54.3 41 61.0
Potri.015G053600 Populus trichocarpa HOM05D006290 ORTHO05D007734 9.2e-06 53.9 80 45.0


User provided reference genes

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